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changinf freesurfer test_preprocess (default number of iterat)
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nipype/interfaces/freesurfer/tests/test_preprocess.py

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -138,13 +138,13 @@ def test_mandatory_outvol(create_files_in_directory):
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# test with custom outfile
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mni.inputs.out_file = 'new_corrected_file.mgz'
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assert mni.cmdline == (
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'mri_nu_correct.mni --i %s --o new_corrected_file.mgz' % (filelist[0]))
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'mri_nu_correct.mni --i %s --n 4 --o new_corrected_file.mgz' % (filelist[0]))
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# constructor based tests
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mni2 = freesurfer.MNIBiasCorrection(
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in_file=filelist[0], out_file='bias_corrected_output', iterations=4)
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in_file=filelist[0], out_file='bias_corrected_output', iterations=2)
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assert mni2.cmdline == (
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'mri_nu_correct.mni --i %s --n 4 --o bias_corrected_output' %
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'mri_nu_correct.mni --i %s --n 2 --o bias_corrected_output' %
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filelist[0])
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