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miykaelmiykael
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FIX: PEP8 - E221 multiple spaces before operator
1 parent f74e738 commit ff755a4

21 files changed

+139
-139
lines changed

‎build_docs.py

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -36,11 +36,11 @@ def run(self):
3636
""" build and install nipype in a temporary location. """
3737
install = self.distribution.get_command_obj('install')
3838
install.install_scripts = self.temp_install_dir
39-
install.install_base = self.temp_install_dir
39+
install.install_base = self.temp_install_dir
4040
install.install_platlib = self.temp_install_dir
4141
install.install_purelib = self.temp_install_dir
42-
install.install_data = self.temp_install_dir
43-
install.install_lib = self.temp_install_dir
42+
install.install_data = self.temp_install_dir
43+
install.install_lib = self.temp_install_dir
4444
install.install_headers = self.temp_install_dir
4545
install.run()
4646

‎examples/fmri_freesurfer_smooth.py

Lines changed: 13 additions & 13 deletions
Original file line numberDiff line numberDiff line change
@@ -102,12 +102,12 @@
102102
"""
103103

104104
art = pe.Node(interface=ra.ArtifactDetect(), name="art")
105-
art.inputs.use_differences = [True, False]
106-
art.inputs.use_norm = True
107-
art.inputs.norm_threshold = 1
105+
art.inputs.use_differences = [True, False]
106+
art.inputs.use_norm = True
107+
art.inputs.norm_threshold = 1
108108
art.inputs.zintensity_threshold = 3
109-
art.inputs.mask_type = 'file'
110-
art.inputs.parameter_source = 'SPM'
109+
art.inputs.mask_type = 'file'
110+
art.inputs.parameter_source = 'SPM'
111111

112112
"""
113113
Use :class:`nipype.interfaces.freesurfer.BBRegister` to coregister the mean
@@ -199,15 +199,15 @@
199199
"""
200200

201201
modelspec = pe.Node(interface=model.SpecifySPMModel(), name= "modelspec")
202-
modelspec.inputs.concatenate_runs = True
202+
modelspec.inputs.concatenate_runs = True
203203

204204
"""
205205
Generate a first level SPM.mat file for analysis
206206
:class:`nipype.interfaces.spm.Level1Design`.
207207
"""
208208

209209
level1design = pe.Node(interface=spm.Level1Design(), name= "level1design")
210-
level1design.inputs.bases = {'hrf':{'derivs': [0,0]}}
210+
level1design.inputs.bases = {'hrf':{'derivs': [0,0]}}
211211

212212
"""
213213
Use :class:`nipype.interfaces.spm.EstimateModel` to determine the
@@ -481,21 +481,21 @@ def subjectinfo(subject_id):
481481
"""
482482

483483
modelspecref = l1pipeline.inputs.volanalysis.modelspec
484-
modelspecref.input_units = 'secs'
485-
modelspecref.time_repetition = 3.
484+
modelspecref.input_units = 'secs'
485+
modelspecref.time_repetition = 3.
486486
modelspecref.high_pass_filter_cutoff = 120
487487

488488
modelspecref = l1pipeline.inputs.surfanalysis.modelspec
489-
modelspecref.input_units = 'secs'
490-
modelspecref.time_repetition = 3.
489+
modelspecref.input_units = 'secs'
490+
modelspecref.time_repetition = 3.
491491
modelspecref.high_pass_filter_cutoff = 120
492492

493493
l1designref = l1pipeline.inputs.volanalysis.level1design
494-
l1designref.timing_units = modelspecref.output_units
494+
l1designref.timing_units = modelspecref.output_units
495495
l1designref.interscan_interval = modelspecref.time_repetition
496496

497497
l1designref = l1pipeline.inputs.surfanalysis.level1design
498-
l1designref.timing_units = modelspecref.output_units
498+
l1designref.timing_units = modelspecref.output_units
499499
l1designref.interscan_interval = modelspecref.time_repetition
500500

501501
l1pipeline.inputs.inputnode.contrasts = contrasts

‎examples/fmri_fsl.py

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -425,7 +425,7 @@ def getinormscale(medianvals):
425425
varcopes for each condition
426426
"""
427427

428-
copemerge = pe.MapNode(interface=fsl.Merge(dimension='t'),
428+
copemerge = pe.MapNode(interface=fsl.Merge(dimension='t'),
429429
iterfield=['in_files'],
430430
name="copemerge")
431431

‎examples/fmri_nipy_glm.py

Lines changed: 9 additions & 9 deletions
Original file line numberDiff line numberDiff line change
@@ -121,12 +121,12 @@
121121
"""
122122

123123
art = pe.Node(interface=ra.ArtifactDetect(), name="art")
124-
art.inputs.use_differences = [True, False]
125-
art.inputs.use_norm = True
126-
art.inputs.norm_threshold = 1
124+
art.inputs.use_differences = [True, False]
125+
art.inputs.use_norm = True
126+
art.inputs.norm_threshold = 1
127127
art.inputs.zintensity_threshold = 3
128-
art.inputs.mask_type = 'file'
129-
art.inputs.parameter_source = 'SPM'
128+
art.inputs.mask_type = 'file'
129+
art.inputs.parameter_source = 'SPM'
130130

131131

132132
"""Use :class:`nipype.interfaces.spm.Coregister` to perform a rigid
@@ -192,10 +192,10 @@ def subjectinfo(subject_id):
192192
"""
193193

194194
modelspec = pe.Node(interface=model.SpecifySPMModel(), name= "modelspec")
195-
modelspec.inputs.concatenate_runs = True
196-
modelspec.inputs.input_units = 'secs'
197-
modelspec.inputs.output_units = 'secs'
198-
modelspec.inputs.time_repetition = 3.
195+
modelspec.inputs.concatenate_runs = True
196+
modelspec.inputs.input_units = 'secs'
197+
modelspec.inputs.output_units = 'secs'
198+
modelspec.inputs.time_repetition = 3.
199199
modelspec.inputs.high_pass_filter_cutoff = 120
200200

201201
"""Fit the GLM model using nipy and ordinary least square method

‎examples/fmri_spm.py

Lines changed: 11 additions & 11 deletions
Original file line numberDiff line numberDiff line change
@@ -129,12 +129,12 @@
129129
"""
130130

131131
art = pe.Node(interface=ra.ArtifactDetect(), name="art")
132-
art.inputs.use_differences = [True, False]
133-
art.inputs.use_norm = True
134-
art.inputs.norm_threshold = 1
132+
art.inputs.use_differences = [True, False]
133+
art.inputs.use_norm = True
134+
art.inputs.norm_threshold = 1
135135
art.inputs.zintensity_threshold = 3
136-
art.inputs.mask_type = 'file'
137-
art.inputs.parameter_source = 'SPM'
136+
art.inputs.mask_type = 'file'
137+
art.inputs.parameter_source = 'SPM'
138138

139139
"""Skull strip structural images using
140140
:class:`nipype.interfaces.fsl.BET`.
@@ -210,20 +210,20 @@ def subjectinfo(subject_id):
210210
"""
211211

212212
modelspec = pe.Node(interface=model.SpecifySPMModel(), name= "modelspec")
213-
modelspec.inputs.concatenate_runs = False
214-
modelspec.inputs.input_units = 'secs'
215-
modelspec.inputs.output_units = 'secs'
216-
modelspec.inputs.time_repetition = 3.
213+
modelspec.inputs.concatenate_runs = False
214+
modelspec.inputs.input_units = 'secs'
215+
modelspec.inputs.output_units = 'secs'
216+
modelspec.inputs.time_repetition = 3.
217217
modelspec.inputs.high_pass_filter_cutoff = 120
218218

219219
"""Generate a first level SPM.mat file for analysis
220220
:class:`nipype.interfaces.spm.Level1Design`.
221221
"""
222222

223223
level1design = pe.Node(interface=spm.Level1Design(), name= "level1design")
224-
level1design.inputs.timing_units = modelspec.inputs.output_units
224+
level1design.inputs.timing_units = modelspec.inputs.output_units
225225
level1design.inputs.interscan_interval = modelspec.inputs.time_repetition
226-
level1design.inputs.bases = {'hrf':{'derivs': [0,0]}}
226+
level1design.inputs.bases = {'hrf':{'derivs': [0,0]}}
227227

228228

229229
"""Use :class:`nipype.interfaces.spm.EstimateModel` to determine the

‎examples/fmri_spm_auditory.py

Lines changed: 5 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -166,7 +166,7 @@ def get_vox_dims(volume):
166166
"""
167167

168168
level1design = pe.Node(interface=spm.Level1Design(), name= "level1design")
169-
level1design.inputs.bases = {'hrf':{'derivs': [0,0]}}
169+
level1design.inputs.bases = {'hrf':{'derivs': [0,0]}}
170170

171171
"""Use :class:`nipype.interfaces.spm.EstimateModel` to determine the
172172
parameters of the model.
@@ -299,13 +299,13 @@ def makelist(item):
299299

300300
# set up node specific inputs
301301
modelspecref = l1pipeline.inputs.analysis.modelspec
302-
modelspecref.input_units = 'scans'
303-
modelspecref.output_units = 'scans'
304-
modelspecref.time_repetition = 7
302+
modelspecref.input_units = 'scans'
303+
modelspecref.output_units = 'scans'
304+
modelspecref.time_repetition = 7
305305
modelspecref.high_pass_filter_cutoff = 120
306306

307307
l1designref = l1pipeline.inputs.analysis.level1design
308-
l1designref.timing_units = modelspecref.output_units
308+
l1designref.timing_units = modelspecref.output_units
309309
l1designref.interscan_interval = modelspecref.time_repetition
310310

311311
l1pipeline.inputs.preproc.smooth.fwhm = [6, 6, 6]

‎examples/fmri_spm_dartel.py

Lines changed: 11 additions & 11 deletions
Original file line numberDiff line numberDiff line change
@@ -77,12 +77,12 @@
7777
"""
7878

7979
art = pe.Node(interface=ra.ArtifactDetect(), name="art")
80-
art.inputs.use_differences = [True, False]
81-
art.inputs.use_norm = True
82-
art.inputs.norm_threshold = 1
80+
art.inputs.use_differences = [True, False]
81+
art.inputs.use_norm = True
82+
art.inputs.norm_threshold = 1
8383
art.inputs.zintensity_threshold = 3
84-
art.inputs.mask_type = 'file'
85-
art.inputs.parameter_source = 'SPM'
84+
art.inputs.mask_type = 'file'
85+
art.inputs.parameter_source = 'SPM'
8686

8787
"""Skull strip structural images using
8888
:class:`nipype.interfaces.fsl.BET`.
@@ -135,14 +135,14 @@
135135
"""
136136

137137
modelspec = pe.Node(interface=model.SpecifySPMModel(), name= "modelspec")
138-
modelspec.inputs.concatenate_runs = True
138+
modelspec.inputs.concatenate_runs = True
139139

140140
"""Generate a first level SPM.mat file for analysis
141141
:class:`nipype.interfaces.spm.Level1Design`.
142142
"""
143143

144144
level1design = pe.Node(interface=spm.Level1Design(), name= "level1design")
145-
level1design.inputs.bases = {'hrf':{'derivs': [0,0]}}
145+
level1design.inputs.bases = {'hrf':{'derivs': [0,0]}}
146146

147147
"""Use :class:`nipype.interfaces.spm.EstimateModel` to determine the
148148
parameters of the model.
@@ -355,13 +355,13 @@ def subjectinfo(subject_id):
355355

356356
# set up node specific inputs
357357
modelspecref = l1pipeline.inputs.analysis.modelspec
358-
modelspecref.input_units = 'secs'
359-
modelspecref.output_units = 'secs'
360-
modelspecref.time_repetition = 3.
358+
modelspecref.input_units = 'secs'
359+
modelspecref.output_units = 'secs'
360+
modelspecref.time_repetition = 3.
361361
modelspecref.high_pass_filter_cutoff = 120
362362

363363
l1designref = l1pipeline.inputs.analysis.level1design
364-
l1designref.timing_units = modelspecref.output_units
364+
l1designref.timing_units = modelspecref.output_units
365365
l1designref.interscan_interval = modelspecref.time_repetition
366366

367367

‎examples/fmri_spm_face.py

Lines changed: 4 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -335,13 +335,13 @@ def makelist(item):
335335

336336
# set up node specific inputs
337337
modelspecref = l1pipeline.inputs.analysis.modelspec
338-
modelspecref.input_units = 'scans'
339-
modelspecref.output_units = 'scans'
340-
modelspecref.time_repetition = TR
338+
modelspecref.input_units = 'scans'
339+
modelspecref.output_units = 'scans'
340+
modelspecref.time_repetition = TR
341341
modelspecref.high_pass_filter_cutoff = 120
342342

343343
l1designref = l1pipeline.inputs.analysis.level1design
344-
l1designref.timing_units = modelspecref.output_units
344+
l1designref.timing_units = modelspecref.output_units
345345
l1designref.interscan_interval = modelspecref.time_repetition
346346
l1designref.microtime_resolution = slice_timingref.num_slices
347347
l1designref.microtime_onset = slice_timingref.ref_slice

‎examples/fmri_spm_nested.py

Lines changed: 11 additions & 11 deletions
Original file line numberDiff line numberDiff line change
@@ -78,12 +78,12 @@
7878
"""
7979

8080
art = pe.Node(interface=ra.ArtifactDetect(), name="art")
81-
art.inputs.use_differences = [True, False]
82-
art.inputs.use_norm = True
83-
art.inputs.norm_threshold = 1
81+
art.inputs.use_differences = [True, False]
82+
art.inputs.use_norm = True
83+
art.inputs.norm_threshold = 1
8484
art.inputs.zintensity_threshold = 3
85-
art.inputs.mask_type = 'file'
86-
art.inputs.parameter_source = 'SPM'
85+
art.inputs.mask_type = 'file'
86+
art.inputs.parameter_source = 'SPM'
8787

8888
"""Skull strip structural images using
8989
:class:`nipype.interfaces.fsl.BET`.
@@ -141,14 +141,14 @@
141141
"""
142142

143143
modelspec = pe.Node(interface=model.SpecifySPMModel(), name= "modelspec")
144-
modelspec.inputs.concatenate_runs = True
144+
modelspec.inputs.concatenate_runs = True
145145

146146
"""Generate a first level SPM.mat file for analysis
147147
:class:`nipype.interfaces.spm.Level1Design`.
148148
"""
149149

150150
level1design = pe.Node(interface=spm.Level1Design(), name= "level1design")
151-
level1design.inputs.bases = {'hrf':{'derivs': [0,0]}}
151+
level1design.inputs.bases = {'hrf':{'derivs': [0,0]}}
152152

153153
"""Use :class:`nipype.interfaces.spm.EstimateModel` to determine the
154154
parameters of the model.
@@ -318,13 +318,13 @@ def subjectinfo(subject_id):
318318

319319
# set up node specific inputs
320320
modelspecref = l1pipeline.inputs.analysis.modelspec
321-
modelspecref.input_units = 'secs'
322-
modelspecref.output_units = 'secs'
323-
modelspecref.time_repetition = 3.
321+
modelspecref.input_units = 'secs'
322+
modelspecref.output_units = 'secs'
323+
modelspecref.time_repetition = 3.
324324
modelspecref.high_pass_filter_cutoff = 120
325325

326326
l1designref = l1pipeline.inputs.analysis.level1design
327-
l1designref.timing_units = modelspecref.output_units
327+
l1designref.timing_units = modelspecref.output_units
328328
l1designref.interscan_interval = modelspecref.time_repetition
329329

330330

‎examples/frontiers_paper/smoothing_comparison.py

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -105,8 +105,8 @@ def chooseindex(roi):
105105
preprocessing.connect(select_smoothed_files, 'out', rename, 'in_file')
106106

107107
specify_model = pe.Node(interface=model.SpecifyModel(), name="specify_model")
108-
specify_model.inputs.input_units = 'secs'
109-
specify_model.inputs.time_repetition = 3.
108+
specify_model.inputs.input_units = 'secs'
109+
specify_model.inputs.time_repetition = 3.
110110
specify_model.inputs.high_pass_filter_cutoff = 120
111111
specify_model.inputs.subject_info = [Bunch(conditions=['Task-Odd','Task-Even'],
112112
onsets=[list(range(15,240,60)),

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