Error while checking node hash, forcing re-run. Although this error may not prevent the workflow from running, it could indicate a major problem. Please report a new issue at https://github.com/nipy/nipype/issues adding the following information:
Node: nibabies_25_1_wf.single_subject_sub-702551_ses-11_wf.infant_anat_fit_wf.infantfs_surface_recon_wf.fssource
Interface: niworkflows.interfaces.patches.FreeSurferSource
Traceback:
Traceback (most recent call last):
File "/opt/conda/envs/nibabies/lib/python3.12/site-packages/nipype/pipeline/plugins/base.py", line 375, in _local_hash_check
cached, updated = self.procs[jobid].is_cached()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/opt/conda/envs/nibabies/lib/python3.12/site-packages/nipype/pipeline/engine/nodes.py", line 340, in is_cached
hashed_inputs, hashvalue = self._get_hashval()
^^^^^^^^^^^^^^^^^^^
File "/opt/conda/envs/nibabies/lib/python3.12/site-packages/nipype/pipeline/engine/nodes.py", line 546, in _get_hashval
self._get_inputs()
File "/opt/conda/envs/nibabies/lib/python3.12/site-packages/nipype/pipeline/engine/nodes.py", line 588, in _get_inputs
outputs = _load_resultfile(results_fname).outputs
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/opt/conda/envs/nibabies/lib/python3.12/site-packages/nipype/pipeline/engine/utils.py", line 292, in load_resultfile
result = loadpkl(results_file)
^^^^^^^^^^^^^^^^^^^^^
File "/opt/conda/envs/nibabies/lib/python3.12/site-packages/nipype/utils/filemanip.py", line 643, in loadpkl
raise e
File "/opt/conda/envs/nibabies/lib/python3.12/site-packages/nipype/utils/filemanip.py", line 620, in loadpkl
unpkl = pickle.loads(pkl_contents)
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/opt/conda/envs/nibabies/lib/python3.12/site-packages/traits/has_traits.py", line 1355, in __setstate__
self.trait_set(trait_change_notify=trait_change_notify, **state)
File "/opt/conda/envs/nibabies/lib/python3.12/site-packages/traits/has_traits.py", line 1458, in trait_set
setattr(self, name, value)
File "/opt/conda/envs/nibabies/lib/python3.12/site-packages/nipype/interfaces/base/traits_extension.py", line 135, in validate
self.error(objekt, name, str(value))
File "/opt/conda/envs/nibabies/lib/python3.12/site-packages/traits/base_trait_handler.py", line 74, in error
raise TraitError(
traits.trait_errors.TraitError: The 'outdir' trait of an InfantReconAllOutputSpec instance must be a pathlike object or string representing an existing directory, but a value of '/out/sourcedata/freesurfer/sub-702551_ses-11' <class 'str'> was specified.
250716-09:06:40,15 nipype.utils WARNING:
No metadata was found in the pkl file. Make sure you are currently using the same Nipype version from the generated pkl.
250716-09:06:40,15 nipype.workflow CRITICAL:
nibabies failed: The 'outdir' trait of an InfantReconAllOutputSpec instance must be a pathlike object or string representing an existing directory, but a value of '/out/sourcedata/freesurfer/sub-702551_ses-11' <class 'str'> was specified.
Traceback (most recent call last):
File "/opt/conda/envs/nibabies/bin/nibabies", line 8, in <module>
sys.exit(main())
^^^^^^
File "/opt/conda/envs/nibabies/lib/python3.12/site-packages/nibabies/cli/run.py", line 104, in main
nibabies_wf.run(**_plugin)
File "/opt/conda/envs/nibabies/lib/python3.12/site-packages/nipype/pipeline/engine/workflows.py", line 625, in run
runner.run(execgraph, updatehash=updatehash, config=self.config)
File "/opt/conda/envs/nibabies/lib/python3.12/site-packages/nipype/pipeline/plugins/base.py", line 198, in run
self._send_procs_to_workers(updatehash=updatehash, graph=graph)
File "/opt/conda/envs/nibabies/lib/python3.12/site-packages/nipype/pipeline/plugins/multiproc.py", line 382, in _send_procs_to_workers
cached, updated = self.procs[jobid].is_cached()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/opt/conda/envs/nibabies/lib/python3.12/site-packages/nipype/pipeline/engine/nodes.py", line 340, in is_cached
hashed_inputs, hashvalue = self._get_hashval()
^^^^^^^^^^^^^^^^^^^
File "/opt/conda/envs/nibabies/lib/python3.12/site-packages/nipype/pipeline/engine/nodes.py", line 546, in _get_hashval
self._get_inputs()
File "/opt/conda/envs/nibabies/lib/python3.12/site-packages/nipype/pipeline/engine/nodes.py", line 588, in _get_inputs
outputs = _load_resultfile(results_fname).outputs
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/opt/conda/envs/nibabies/lib/python3.12/site-packages/nipype/pipeline/engine/utils.py", line 292, in load_resultfile
result = loadpkl(results_file)
^^^^^^^^^^^^^^^^^^^^^
File "/opt/conda/envs/nibabies/lib/python3.12/site-packages/nipype/utils/filemanip.py", line 643, in loadpkl
raise e
File "/opt/conda/envs/nibabies/lib/python3.12/site-packages/nipype/utils/filemanip.py", line 620, in loadpkl
unpkl = pickle.loads(pkl_contents)
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/opt/conda/envs/nibabies/lib/python3.12/site-packages/traits/has_traits.py", line 1355, in __setstate__
self.trait_set(trait_change_notify=trait_change_notify, **state)
File "/opt/conda/envs/nibabies/lib/python3.12/site-packages/traits/has_traits.py", line 1458, in trait_set
setattr(self, name, value)
File "/opt/conda/envs/nibabies/lib/python3.12/site-packages/nipype/interfaces/base/traits_extension.py", line 135, in validate
self.error(objekt, name, str(value))
File "/opt/conda/envs/nibabies/lib/python3.12/site-packages/traits/base_trait_handler.py", line 74, in error
raise TraitError(
traits.trait_errors.TraitError: The 'outdir' trait of an InfantReconAllOutputSpec instance must be a pathlike object or string representing an existing directory, but a value of '/out/sourcedata/freesurfer/sub-702551_ses-11' <class 'str'> was specified.
250716-09:07:02,165 nipype.workflow INFO:
[Node] Finished "boldref_bold", elapsed time 44.286528s.
250716-09:07:04,746 nipype.workflow INFO:
[Node] Finished "boldref_bold", elapsed time 44.778884s.
