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@@ -13,6 +13,9 @@ authors:
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- name: Christopher J. Markiewicz
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orcid: 0000-0002-6533-164X
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affiliation: "1, 2"
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- name: Stefano Moia
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orcid: 0000-0002-2553-3327
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affiliation: "4"
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- name: Satrajit S. Ghosh
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orcid: 0000-0002-5312-6729
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affiliation: "2, 3"
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index: 2
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- name: Department of Otolaryngology, Harvard Medical School, Boston, MA, USA
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index: 3
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- name: Basque Center on Cognition Brain and Language, San Sebastian, Spain
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index: 4
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date: 04 November 2019
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bibliography: nt.bib
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@@ -62,6 +67,8 @@ An example of image fusion application would be the alignment of functional data
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Therefore, "applying a transform" entails two operations: first, transforming the coordinates of the samples in the reference image $R$ to find their mapping $\vec{x}'$ on $M$ via $T\{\cdot\}$, and second an interpolation step as $\vec{x}'$ will likely fall off-the-grid of the moving image $M$.
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These two operations are confusing because, while the spatial transformation projects from $R$ to $M$, the data flows in reversed way after the interpolation of the values of $M$ at the mapped coordinates $\vec{x}'$.
There are four main components within the tool: an `io` submodule to handle the structure of the various file formats, a `base` submodule where abstract classes are defined, a `linear` submodule implementing $n$-dimensional linear transforms, and a `nonlinear` submodule for both parametric and non-parametric nonlinear transforms.
@@ -79,6 +86,4 @@ Unit tests evaluate the formal correctness of the implementation, while cross-to
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comparison tests assess the correct implementation of third-party software.
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The testing suite is incorporated into a continuous integration framework, which assesses the continuity of the implementation along the development life and ensures that code changes and additions do not break existing functionalities.
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