@@ -40,6 +40,30 @@ def test_displacements_init():
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)
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+ @pytest .mark .parametrize ("image_orientation" , ["RAS" , "LAS" , "LPS" , "oblique" ])
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+ @pytest .mark .parametrize ("axis" , [0 , 1 , 2 , (0 , 1 ), (1 , 2 ), (0 , 1 , 2 )])
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+ def test_displacements_to_filename (tmp_path , get_testdata , image_orientation , axis ):
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+ """Exercise to_filename."""
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+
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+ nii = get_testdata [image_orientation ]
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+ fieldmap = np .zeros ((* nii .shape [:3 ], 3 ), dtype = "float32" )
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+ fieldmap [..., axis ] = - 10.0
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+
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+ xfm = DenseFieldTransform (
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+ fieldmap ,
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+ reference = nii ,
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+ )
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+ xfm .to_filename (tmp_path / "warp_itk.nii.gz" , fmt = "itk" )
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+ xfm .to_filename (tmp_path / "warp_afni.nii.gz" , fmt = "afni" )
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+ xfm .to_filename (tmp_path / "warp_fsl.nii.gz" , fmt = "fsl" )
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+
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+ with pytest .raises (NotImplementedError ):
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+ xfm .to_filename (tmp_path / "warp_freesurfer.nii.gz" , fmt = "fs" )
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+
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+ with pytest .raises (TypeError ):
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+ xfm .to_filename (tmp_path / "warp.x5" , fmt = "X5" )
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+
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+
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@pytest .mark .parametrize ("size" , [(20 , 20 , 20 ), (20 , 20 , 20 , 2 , 3 ), (20 , 20 , 20 , 1 , 4 )])
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def test_displacements_bad_sizes (size ):
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"""Checks field sizes."""
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