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smoia
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Bug fixes for AFNI test
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nitransforms/tests/test_nonlinear.py

Lines changed: 4 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -76,7 +76,7 @@ def test_displacements_field1(tmp_path, get_testdata, image_orientation, sw_tool
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ITKDisplacementsField.from_image(field))
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elif sw_tool == 'afni':
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xfm = DisplacementsFieldTransform(
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AFNIDisplacementField.from_image(field))
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AFNIDisplacementsField.from_image(field))
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# Then apply the transform and cross-check with software
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cmd = APPLY_NONLINEAR_CMD[sw_tool](
@@ -105,15 +105,14 @@ def test_displacements_field2(tmp_path, data_path, sw_tool):
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"""Check a translation-only field on one or more axes, different image orientations."""
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os.chdir(str(tmp_path))
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img_fname = data_path / 'tpl-OASIS30ANTs_T1w.nii.gz'
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xfm_fname = data_path / 'ds-005_sub-01_from-OASIS_to-T1_warp_{}.nii.gz'.format(sw_tool)
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if sw_tool == 'itk':
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xfm_fname = data_path / 'ds-005_sub-01_from-OASIS_to-T1_warp.nii.gz'
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xfm = DisplacementsFieldTransform(
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ITKDisplacementsField.from_image(field))
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ITKDisplacementsField.from_filename(xfm_fname))
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elif sw_tool == 'afni':
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xfm_fname = data_path / 'itk_into_afni.nii.gz'
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xfm = DisplacementsFieldTransform(
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AFNIDisplacementField.from_image(field))
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AFNIDisplacementsField.from_filename(xfm_fname))
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# Then apply the transform and cross-check with software
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cmd = APPLY_NONLINEAR_CMD[sw_tool](

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