sty: use nibabels linting settings

Author: mgxd

.pep8speaks.yml

@@ -1,13 +1,6 @@
 scanner:
     diff_only: True  # If False, the entire file touched by the Pull Request is scanned for errors. If True, only the diff is scanned.
-    linter: pycodestyle  # Other option is flake8
-
-pycodestyle:  # Same as scanner.linter value. Other option is flake8
-    max-line-length: 88  # Follow black's line length
-    ignore:  # Errors and warnings to ignore
-        - E266  # Too many leading '#' for block comments
-        - E402  # module level import not at top of file
-        - W503  # line break before binary operator
+    linter: flake8  # Other option is flake8
 
 
 no_blank_comment: False  # If True, no comment is made on PR without any errors.

nitransforms/patched.py

@@ -1,6 +1,7 @@
 import numpy as np
 from nibabel.affines import voxel_sizes
 
+
 def obliquity(affine):
     r"""
     Estimate the *obliquity* an affine's axes represent.
@@ -24,6 +25,7 @@ def obliquity(affine):
     best_cosines = np.abs((affine[:-1, :-1] / vs).max(axis=1))
     return np.arccos(best_cosines)
 
+
 def shape_zoom_affine(shape, zooms, x_flip=True, y_flip=False):
     ''' Get affine implied by given shape and zooms
     We get the translations from the center of the image (implied by
@@ -85,4 +87,4 @@ def shape_zoom_affine(shape, zooms, x_flip=True, y_flip=False):
     aff = np.eye(4)
     aff[:3, :3] = np.diag(zooms)
     aff[:3, -1] = -origin * zooms
-    return aff
+    return aff

nitransforms/tests/test_affines.py

@@ -3,6 +3,7 @@
 from nibabel.eulerangles import euler2mat
 from ..patched import obliquity
 
+
 def test_obliquity():
     """Check the calculation of inclination of an affine axes."""
     from math import pi

setup.cfg

@@ -24,3 +24,6 @@ tests =
 all =
     %(test)s
 
+[flake8]
+max-line-length = 100
+ignore = D100,D101,D102,D103,D104,D105,D200,D201,D202,D204,D205,D208,D209,D210,D300,D301,D400,D401,D403,E24,E121,E123,E126,E226,E266,E402,E704,E731,F821,I100,I101,I201,N802,N803,N804,N806,W503,W504,W605