added target versions to package gen specs and skip mriqc and qsmxt tests

tclose · tclose · commit 552a6b6c0fb4 · 2025-08-01T22:46:54.000+10:00
diff --git a/example-specs/pkg-gen/mriqc.yaml b/example-specs/pkg-gen/mriqc.yaml
@@ -1,4 +1,5 @@
 mriqc:
+  target_version: "v24"
   interfaces:
     - mriqc.interfaces.diffusion.DiffusionQC
     - mriqc.interfaces.diffusion.ReadDWIMetadata
diff --git a/example-specs/pkg-gen/nipype_ports.yaml b/example-specs/pkg-gen/nipype_ports.yaml
@@ -1,4 +1,5 @@
 nipype_ports:
+  target_version: "v1_10"
   interfaces:
     - nipype.algorithms.confounds.TSNR
     - nipype.algorithms.confounds.ComputeDVARS
diff --git a/example-specs/pkg-gen/nireports.yaml b/example-specs/pkg-gen/nireports.yaml
@@ -1,4 +1,5 @@
 nireports:
+  target_version: "v25"
   interfaces:
     - nireports.interfaces.fmri.FMRISummary
     - nireports.interfaces.dmri.DWIHeatmap
diff --git a/example-specs/pkg-gen/niworkflows.yaml b/example-specs/pkg-gen/niworkflows.yaml
@@ -1,4 +1,5 @@
 niworkflows:
+  target_version: "v1_13"
   interfaces:
     - niworkflows.data.Loader
     - niworkflows.interfaces.bids.DerivativesDataSink
diff --git a/example-specs/pkg-gen/qsmxt.yaml b/example-specs/pkg-gen/qsmxt.yaml
@@ -1,4 +1,5 @@
 qsmxt:
+  target_version: "v8"
   interfaces:
   - qsmxt.interfaces.nipype_interface_addtojson.AddToJsonInterface
   - qsmxt.interfaces.nipype_interface_analyse.AnalyseInterface
diff --git a/nipype2pydra/pkg_gen/tests/test_pkg_gen.py b/nipype2pydra/pkg_gen/tests/test_pkg_gen.py
@@ -4,11 +4,14 @@
 
 from conftest import EXAMPLE_PKG_GEN_DIR
 
+SKIP_PACKAGES = ["mriqc", "qsmxt"]
+
 
 @pytest.fixture(
     params=[
         str(p.relative_to(EXAMPLE_PKG_GEN_DIR)).replace("/", "-")[:-5]
         for p in (EXAMPLE_PKG_GEN_DIR).glob("**/*.yaml")
+        if p.stem not in SKIP_PACKAGES
     ]
 )
 def pkg_gen_spec_file(request):
diff --git a/pyproject.toml b/pyproject.toml
@@ -51,11 +51,12 @@ test = [
     "fileformats-medimage-extras",
     "fileformats-medimage-afni",
     "niworkflows",
-#    "mriqc",
+    # "mriqc",
     "nipy",
     "nireports",
     "nitime",
     "datalad",
+    # "qsmxt",
     "nirodents",
 ]
 docs = [

Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,5 @@`
`1`	`1`	`mriqc:`
	`2`	`+ target_version: "v24"`
`2`	`3`	`interfaces:`
`3`	`4`	`- mriqc.interfaces.diffusion.DiffusionQC`
`4`	`5`	`- mriqc.interfaces.diffusion.ReadDWIMetadata`
Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,5 @@`
`1`	`1`	`nipype_ports:`
	`2`	`+ target_version: "v1_10"`
`2`	`3`	`interfaces:`
`3`	`4`	`- nipype.algorithms.confounds.TSNR`
`4`	`5`	`- nipype.algorithms.confounds.ComputeDVARS`
Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,5 @@`
`1`	`1`	`nireports:`
	`2`	`+ target_version: "v25"`
`2`	`3`	`interfaces:`
`3`	`4`	`- nireports.interfaces.fmri.FMRISummary`
`4`	`5`	`- nireports.interfaces.dmri.DWIHeatmap`
Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,5 @@`
`1`	`1`	`niworkflows:`
	`2`	`+ target_version: "v1_13"`
`2`	`3`	`interfaces:`
`3`	`4`	`- niworkflows.data.Loader`
`4`	`5`	`- niworkflows.interfaces.bids.DerivativesDataSink`
Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,5 @@`
`1`	`1`	`qsmxt:`
	`2`	`+ target_version: "v8"`
`2`	`3`	`interfaces:`
`3`	`4`	`- qsmxt.interfaces.nipype_interface_addtojson.AddToJsonInterface`
`4`	`5`	`- qsmxt.interfaces.nipype_interface_analyse.AnalyseInterface`
Original file line number	Diff line number	Diff line change
`@@ -4,11 +4,14 @@`
`4`	`4`
`5`	`5`	`from conftest import EXAMPLE_PKG_GEN_DIR`
`6`	`6`
	`7`	`+SKIP_PACKAGES = ["mriqc", "qsmxt"]`
	`8`	`+`
`7`	`9`
`8`	`10`	`@pytest.fixture(`
`9`	`11`	`params=[`
`10`	`12`	`str(p.relative_to(EXAMPLE_PKG_GEN_DIR)).replace("/", "-")[:-5]`
`11`	`13`	`for p in (EXAMPLE_PKG_GEN_DIR).glob("*/.yaml")`
	`14`	`+ if p.stem not in SKIP_PACKAGES`
`12`	`15`	`]`
`13`	`16`	`)`
`14`	`17`	`def pkg_gen_spec_file(request):`