Merge pull request #57 from nipype/enh/proba

Enh/proba

Author: satra

.gitattributes

@@ -0,0 +1 @@
+pydra_ml/_version.py export-subst

.github/workflows/ci.yml

@@ -12,21 +12,21 @@ jobs:
       fail-fast: true
       matrix:
         os:
-          - windows-2019
-          - ubuntu-20.04
+          - windows-latest
+          - ubuntu-latest
           - macos-latest
         python:
           - 3.8
           - 3.9
           - "3.10"
-          - 3.11
+          - "3.11"
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
         with:  # no need for the history
           fetch-depth: 1
       - name: Set up Python ${{ matrix.python }}
-        uses: actions/setup-python@v2
+        uses: actions/setup-python@v4
         with:
           python-version: ${{ matrix.python }}
 

.github/workflows/publish.yml

@@ -8,12 +8,12 @@ jobs:
   pypi-release:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
 
       - name: Set up Python
-        uses: actions/setup-python@v2
+        uses: actions/setup-python@v4
         with:
-          python-version: 3.7
+          python-version: 3.11
 
       - name: Install build & twine
         run: python -m pip install build twine

.github/workflows/release.yml

@@ -7,15 +7,14 @@ on:
       - master
 
 env:
-  # Pin to v10.28.0, which (as of 2021-05-25) is the latest version with assets
-  AUTO_VERSION: v10.29.3
+  AUTO_VERSION: v11.0.4
 
 jobs:
   auto-release:
     runs-on: ubuntu-latest
     if: "!contains(github.event.head_commit.message, 'ci skip') && !contains(github.event.head_commit.message, 'skip ci')"
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
 
       - name: Prepare repository
         # Fetch full git history and tags
@@ -27,7 +26,7 @@ jobs:
         run: git config --local --unset http.https://github.com/.extraheader
 
       - name: Set up Python
-        uses: actions/setup-python@v2
+        uses: actions/setup-python@v4
         with:
           python-version: 3.7
 

README.md

@@ -114,7 +114,7 @@ will want to generate `x_indices` programmatically.
 - *n_splits*: Number of shuffle split iterations to use
 - *test_size*: Fraction of data to use for test set in each iteration
 - *clf_info*: List of scikit-learn classifiers to use.
-- *permute*: List of booleans to indicate whether to generate a null model or not
+- *permute*: List of booleans to indicate whether to generate a null model with permuted labels aka permutation test (set to true) or not (set to false)
 - *gen_feature_importance*: Boolean indicating whether unique feature importance method should be generated for each model if available (e.g., `coef_` for linear models, `feature_importances_` for tree-based models) *NOT FULLY TESTED: set to false*
 - *gen_permutation_importance*: Boolean indicating whether permutation_importance values are generated (model agnostic, available for all models) *NOT FULLY TESTED: set to false*
 - *gen_shap*: Boolean indicating whether shap values are generated (model agnostic, available for all models)

pydra_ml/__init__.py

@@ -1,10 +1,9 @@
 import logging
 import os
 
-from ._version import get_versions
+from . import _version
 
-__version__ = get_versions()["version"]
-del get_versions
+__version__ = _version.get_versions()["version"]
 
 #
 # Basic logger configuration