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ADD empty test data and fix doc test
Quotation mark in the converter doctest generator produces error for filerregressor.py
1 parent 0cde464 commit 495f97a

16 files changed

+53
-39
lines changed

pydra/tasks/fsl/tests/data/anatomical.nii

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pydra/tasks/fsl/tests/data/design

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pydra/tasks/fsl/tests/data/dest.nii.gz

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pydra/tasks/fsl/tests/data/mask.nii.gz

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pydra/tasks/fsl/tests/data/struct2mni.nii

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pydra/tasks/fsl/tests/data/warpfield.nii

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pydra/tasks/fsl/utils/convertwarp.py

Lines changed: 3 additions & 2 deletions
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@@ -157,10 +157,11 @@ class ConvertWarp(ShellCommandTask):
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-------
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>>> task = ConvertWarp()
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>>> task.inputs.warp1 = "warpfield.nii"
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>>> task.inputs.reference = "T1.nii"
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>>> task.inputs.reference = "test.nii.gz"
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>>> task.inputs.relwarp = True
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>>> task.inputs.out_file = "test_concatwarp.nii.gz"
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>>> task.cmdline
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'convertwarp --ref=T1.nii --rel --warp1=warpfield.nii --out=T1_concatwarp.nii.gz'
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'convertwarp --ref=test.nii.gz --warp1=warpfield.nii --rel --out=test_concatwarp.nii.gz'
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"""
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input_spec = ConvertWarp_input_spec

pydra/tasks/fsl/utils/copygeom.py

Lines changed: 2 additions & 2 deletions
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@@ -60,10 +60,10 @@ class CopyGeom(ShellCommandTask):
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Example
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-------
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>>> task = CopyGeom()
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>>> task.inputs.in_file = "source.nii.gz"
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>>> task.inputs.in_file = "test.nii.gz"
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>>> task.inputs.dest_file = "dest.nii.gz"
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>>> task.cmdline
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'fslcpgeom source.nii.gz dest.nii.gz'
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'fslcpgeom test.nii.gz dest.nii.gz'
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"""
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input_spec = CopyGeom_input_spec

pydra/tasks/fsl/utils/extractroi.py

Lines changed: 2 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -47,9 +47,10 @@ class ExtractROI(ShellCommandTask):
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Example
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-------
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>>> task = ExtractROI()
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>>> task.inputs.in_file = "test.nii"
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>>> task.inputs.in_file = "test.nii.gz"
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>>> task.inputs.t_min = 0
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>>> task.inputs.t_size = 3
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>>> task.inputs.roi_file = "test_trim.nii.gz"
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>>> task.cmdline
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'fslroi test.nii.gz test_trim.nii.gz 0 3'
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"""

pydra/tasks/fsl/utils/filterregressor.py

Lines changed: 2 additions & 1 deletion
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@@ -81,8 +81,9 @@ class FilterRegressor(ShellCommandTask):
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>>> task.inputs.in_file = "test.nii.gz"
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>>> task.inputs.design_file = "design"
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>>> task.inputs.filter_columns = "1,2,3"
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>>> task.inputs.out_file = "test_filtered.nii.gz"
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>>> task.cmdline
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'fsl_regfilt -i test.nii.gz -d design -f 1,2,3 -o test_filtered.nii.gz'
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'fsl_regfilt -i test.nii.gz -o test_filtered.nii.gz -d design -f '1,2,3''
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"""
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input_spec = FilterRegressor_input_spec

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