[pre-commit.ci] auto fixes from pre-commit.com hooks

pre-commit-ci[bot] · pre-commit-ci[bot] · commit cca0b1f96a38 · 2022-08-04T02:57:43.000Z
for more information, see https://pre-commit.ci
diff --git a/pydra/tasks/fsl/model/cluster.py b/pydra/tasks/fsl/model/cluster.py
@@ -65,8 +65,7 @@ def Cluster_output(inputs):
         {
             "help_string": "output of local maxima volume",
             "argstr": "--olmaxim={out_localmax_vol_file}",
-            "output_file_template":  "{in_file}_localmax",
-
+            "output_file_template": "{in_file}_localmax",
         },
     ),
     (
@@ -76,7 +75,7 @@ def Cluster_output(inputs):
         {
             "help_string": "filename for output of size image",
             "argstr": "--osize={out_size_file}",
-            "output_file_template":  "{in_file}_size"
+            "output_file_template": "{in_file}_size",
         },
     ),
     (
@@ -86,7 +85,7 @@ def Cluster_output(inputs):
         {
             "help_string": "filename for output of max image",
             "argstr": "--omax={out_max_file}",
-            "output_file_template":  "{in_file}_max"
+            "output_file_template": "{in_file}_max",
         },
     ),
     (
@@ -96,7 +95,7 @@ def Cluster_output(inputs):
         {
             "help_string": "filename for output of mean image",
             "argstr": "--omean={out_mean_file}",
-            "output_file_template":  "{in_file}_mean"
+            "output_file_template": "{in_file}_mean",
         },
     ),
     (
@@ -106,7 +105,7 @@ def Cluster_output(inputs):
         {
             "help_string": "filename for image output of log pvals",
             "argstr": "--opvals={out_pval_file}",
-            "output_file_template":  "{in_file}_pval"
+            "output_file_template": "{in_file}_pval",
         },
     ),
     (
@@ -217,13 +216,9 @@ def Cluster_output(inputs):
         },
     ),
 ]
-Cluster_input_spec = specs.SpecInfo(
-    name="Input", fields=input_fields, bases=(specs.ShellSpec,)
-)
+Cluster_input_spec = specs.SpecInfo(name="Input", fields=input_fields, bases=(specs.ShellSpec,))
 
-output_fields = [
-    
-]
+output_fields = []
 Cluster_output_spec = specs.SpecInfo(
     name="Output", fields=output_fields, bases=(specs.ShellOutSpec,)
 )
@@ -244,4 +239,4 @@ class Cluster(ShellCommandTask):
 
     input_spec = Cluster_input_spec
     output_spec = Cluster_output_spec
-    executable = "cluster"
+    executable = "cluster"
diff --git a/pydra/tasks/fsl/model/tests/test_spec_cluster.py b/pydra/tasks/fsl/model/tests/test_spec_cluster.py
@@ -7,12 +7,7 @@
     "inputs, outputs",
     [
         (
-            {
-                "in_file": "zstat1.nii.gz",
-                "threshold": 2.3,
-                "use_mm": True,
-                "out_index_file": True
-            },
+            {"in_file": "zstat1.nii.gz", "threshold": 2.3, "use_mm": True, "out_index_file": True},
             [
                 "out_index_file",
                 "out_localmax_txt_file",

Original file line number	Diff line number	Diff line change
`@@ -65,8 +65,7 @@ def Cluster_output(inputs):`
`65`	`65`	`{`
`66`	`66`	`"help_string": "output of local maxima volume",`
`67`	`67`	`"argstr": "--olmaxim={out_localmax_vol_file}",`
`68`		`- "output_file_template": "{in_file}_localmax",`
`69`		`-`
	`68`	`+ "output_file_template": "{in_file}_localmax",`
`70`	`69`	`},`
`71`	`70`	`),`
`72`	`71`	`(`
`@@ -76,7 +75,7 @@ def Cluster_output(inputs):`
`76`	`75`	`{`
`77`	`76`	`"help_string": "filename for output of size image",`
`78`	`77`	`"argstr": "--osize={out_size_file}",`
`79`		`- "output_file_template": "{in_file}_size"`
	`78`	`+ "output_file_template": "{in_file}_size",`
`80`	`79`	`},`
`81`	`80`	`),`
`82`	`81`	`(`
`@@ -86,7 +85,7 @@ def Cluster_output(inputs):`
`86`	`85`	`{`
`87`	`86`	`"help_string": "filename for output of max image",`
`88`	`87`	`"argstr": "--omax={out_max_file}",`
`89`		`- "output_file_template": "{in_file}_max"`
	`88`	`+ "output_file_template": "{in_file}_max",`
`90`	`89`	`},`
`91`	`90`	`),`
`92`	`91`	`(`
`@@ -96,7 +95,7 @@ def Cluster_output(inputs):`
`96`	`95`	`{`
`97`	`96`	`"help_string": "filename for output of mean image",`
`98`	`97`	`"argstr": "--omean={out_mean_file}",`
`99`		`- "output_file_template": "{in_file}_mean"`
	`98`	`+ "output_file_template": "{in_file}_mean",`
`100`	`99`	`},`
`101`	`100`	`),`
`102`	`101`	`(`
`@@ -106,7 +105,7 @@ def Cluster_output(inputs):`
`106`	`105`	`{`
`107`	`106`	`"help_string": "filename for image output of log pvals",`
`108`	`107`	`"argstr": "--opvals={out_pval_file}",`
`109`		`- "output_file_template": "{in_file}_pval"`
	`108`	`+ "output_file_template": "{in_file}_pval",`
`110`	`109`	`},`
`111`	`110`	`),`
`112`	`111`	`(`
`@@ -217,13 +216,9 @@ def Cluster_output(inputs):`
`217`	`216`	`},`
`218`	`217`	`),`
`219`	`218`	`]`
`220`		`-Cluster_input_spec = specs.SpecInfo(`
`221`		`- name="Input", fields=input_fields, bases=(specs.ShellSpec,)`
`222`		`-)`
	`219`	`+Cluster_input_spec = specs.SpecInfo(name="Input", fields=input_fields, bases=(specs.ShellSpec,))`
`223`	`220`
`224`		`-output_fields = [`
`225`		`-`
`226`		`-]`
	`221`	`+output_fields = []`
`227`	`222`	`Cluster_output_spec = specs.SpecInfo(`
`228`	`223`	`name="Output", fields=output_fields, bases=(specs.ShellOutSpec,)`
`229`	`224`	`)`
`@@ -244,4 +239,4 @@ class Cluster(ShellCommandTask):`
`244`	`239`
`245`	`240`	`input_spec = Cluster_input_spec`
`246`	`241`	`output_spec = Cluster_output_spec`
`247`		`- executable = "cluster"`
	`242`	`+ executable = "cluster"`
Original file line number	Diff line number	Diff line change
`@@ -7,12 +7,7 @@`
`7`	`7`	`"inputs, outputs",`
`8`	`8`	`[`
`9`	`9`	`(`
`10`		`- {`
`11`		`- "in_file": "zstat1.nii.gz",`
`12`		`- "threshold": 2.3,`
`13`		`- "use_mm": True,`
`14`		`- "out_index_file": True`
`15`		`- },`
	`10`	`+ {"in_file": "zstat1.nii.gz", "threshold": 2.3, "use_mm": True, "out_index_file": True},`
`16`	`11`	`[`
`17`	`12`	`"out_index_file",`
`18`	`13`	`"out_localmax_txt_file",`