cicd db

Author: tclose

.github/workflows/ci-cd.yml

@@ -241,6 +241,9 @@ jobs:
         name: MRtrix3
         path: ${{ env.MRTRIX_INSTALL}}
 
+    - name: Make commands executable
+      run: chmod +x ${{ env.MRTRIX_INSTALL }}/bin/*
+
     - name: Set PATH Variable
       run: echo "PATH=$PATH:$MRTRIX_INSTALL/bin" >> $GITHUB_ENV
 

pyproject.toml

@@ -7,11 +7,7 @@ name = "pydra-mrtrix3"
 description = "pydra-mrtrix3 contains Pydra task specifications for MRtrix3 tools"
 readme = "README.rst"
 requires-python = ">=3.8"
-dependencies = [
-    "pydra >=0.23",
-    "fileformats-medimage_mrtrix3",
-    "pytest",
-] # bug in fileformats requires this currently
+dependencies = ["fileformats-medimage_mrtrix3", "numpy", "pydra >=0.23"]
 license = { file = "LICENSE" }
 authors = [{ name = "Thomas G. Close", email = "[email protected]" }]
 maintainers = [{ name = "Thomas G. Close", email = "[email protected]" }]