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regenerated tasks with latest tip of pydra-usage branch
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pydra/tasks/mrtrix3/v3_1/__init__.py

Lines changed: 34 additions & 4 deletions
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@@ -56,6 +56,7 @@
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from .dwinormalise_group import DwiNormalise_Group
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from .dwinormalise_manual import DwiNormalise_Manual
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from .dwinormalise_mtnorm import DwiNormalise_Mtnorm
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from .dwirecon import DwiRecon
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from .dwishellmath import DwiShellmath
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from .fixel2peaks import Fixel2Peaks
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from .fixel2sh import Fixel2Sh
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from .fixelcrop import FixelCrop
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from .fixelfilter import FixelFilter
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from .fixelreorient import FixelReorient
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from .fixeltransform import FixelTransform
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from .fod2dec import Fod2Dec
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from .fod2fixel import Fod2Fixel
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from .label2colour import Label2Colour
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from .mtnormalise import MtNormalise
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from .peaks2amp import Peaks2Amp
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from .peaks2fixel import Peaks2Fixel
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from .peakscheck import PeaksCheck
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from .peaksconvert import PeaksConvert
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from .population_template import PopulationTemplate
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from .responsemean import ResponseMean
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from .sh2amp import Sh2Amp
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from .tck2connectome import Tck2Connectome
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from .tck2fixel import Tck2Fixel
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from .tckconvert import TckConvert
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from .tckdfc import TckDfc
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from .tckedit import TckEdit
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from .tckgen import TckGen
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from .tckglobal import TckGlobal
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from .tckinfo import TckInfo
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from .tckmap import TckMap
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from .tckresample import TckResample
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from .tcksample import TckSample
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from .tcksift import TckSift
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from .tcksift2 import TckSift2
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from .tckstats import TckStats
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from .tcktransform import TckTransform
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from .tensor2metric import Tensor2Metric
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from .transformcalc import TransformCalc
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from .transformcompose import TransformCompose
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from .transformconvert import TransformConvert
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from .tsfdivide import TsfDivide
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from .tsfinfo import TsfInfo
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from .tsfmult import TsfMult
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from .tsfsmooth import TsfSmooth
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from .tsfthreshold import TsfThreshold
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from .tsfvalidate import TsfValidate
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from .vectorstats import VectorStats
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from .voxel2fixel import Voxel2Fixel
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from .voxel2mesh import Voxel2Mesh
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from .warp2metric import Warp2Metric
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from .warpconvert import WarpConvert
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from .warpcorrect import WarpCorrect
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from .warpinit import WarpInit
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from .warpinvert import WarpInvert
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from ..manual.mrcalc import MrCalc
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from .dwirecon import DwiRecon
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from .fixeltransform import FixelTransform
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from .peakscheck import PeaksCheck
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from .peaksconvert import PeaksConvert

pydra/tasks/mrtrix3/v3_1/afdconnectivity.py

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@@ -34,7 +34,7 @@ class AfdConnectivity(shell.Task["AfdConnectivity.Outputs"]):
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MRtrix
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------
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Version:3.0.7-1578-g23fff5b8-dirty, built Nov 28 2025
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Version:3.0.7-1583-g24a09ac5-dirty, built Dec 3 2025
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Author: David Raffelt ([email protected]) and Robert E. Smith ([email protected])
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pydra/tasks/mrtrix3/v3_1/amp2response.py

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@@ -26,7 +26,7 @@ class Amp2Response(shell.Task["Amp2Response.Outputs"]):
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MRtrix
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Version:3.0.7-1583-g24a09ac5-dirty, built Dec 3 2025
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Author: Robert E. Smith ([email protected]) and J-Donald Tournier ([email protected])
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pydra/tasks/mrtrix3/v3_1/amp2sh.py

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@@ -27,7 +27,7 @@ class Amp2Sh(shell.Task["Amp2Sh.Outputs"]):
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MRtrix
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Version:3.0.7-1578-g23fff5b8-dirty, built Nov 28 2025
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Version:3.0.7-1583-g24a09ac5-dirty, built Dec 3 2025
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Author: J-Donald Tournier ([email protected])
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pydra/tasks/mrtrix3/v3_1/connectome2tck.py

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@@ -68,7 +68,7 @@ class Connectome2Tck(shell.Task["Connectome2Tck.Outputs"]):
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Version:3.0.7-1583-g24a09ac5-dirty, built Dec 3 2025
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Author: Robert E. Smith ([email protected])
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pydra/tasks/mrtrix3/v3_1/connectomeedit.py

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@@ -20,7 +20,7 @@ class ConnectomeEdit(shell.Task["ConnectomeEdit.Outputs"]):
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MRtrix
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Version:3.0.7-1583-g24a09ac5-dirty, built Dec 3 2025
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Author: Matteo Frigo ([email protected])
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pydra/tasks/mrtrix3/v3_1/connectomestats.py

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@@ -37,7 +37,7 @@ class ConnectomeStats(shell.Task["ConnectomeStats.Outputs"]):
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Version:3.0.7-1578-g23fff5b8-dirty, built Nov 28 2025
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Version:3.0.7-1583-g24a09ac5-dirty, built Dec 3 2025
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Author: Robert E. Smith ([email protected])
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pydra/tasks/mrtrix3/v3_1/dcmedit.py

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@@ -29,7 +29,7 @@ class DcmEdit(shell.Task["DcmEdit.Outputs"]):
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Version:3.0.7-1583-g24a09ac5-dirty, built Dec 3 2025
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Author: J-Donald Tournier ([email protected])
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@@ -69,7 +69,7 @@ class DcmEdit(shell.Task["DcmEdit.Outputs"]):
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argstr="-id",
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help="""replace all ID tags with string supplied. This consists of tags (0010, 0020) PatientID and (0010, 1000) OtherPatientIDs""",
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)
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tag: MultiInputObj[tuple[Any, Any, Any]] | None = shell.arg(
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tag: MultiInputObj[tuple[str, str, str]] | None = shell.arg(
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default=None,
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argstr="-tag",
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help="""replace specific tag.""",

pydra/tasks/mrtrix3/v3_1/dcminfo.py

Lines changed: 1 addition & 1 deletion
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@@ -20,7 +20,7 @@ class DcmInfo(shell.Task["DcmInfo.Outputs"]):
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Version:3.0.7-1583-g24a09ac5-dirty, built Dec 3 2025
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Author: J-Donald Tournier ([email protected])
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pydra/tasks/mrtrix3/v3_1/dirflip.py

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@@ -22,7 +22,7 @@ class DirFlip(shell.Task["DirFlip.Outputs"]):
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MRtrix
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Version:3.0.7-1583-g24a09ac5-dirty, built Dec 3 2025
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Author: J-Donald Tournier ([email protected])
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