db cicd

Author: tclose

.github/workflows/ci-cd.yml

@@ -215,7 +215,14 @@ jobs:
       run:
         shell: bash -l {0}
     steps:
-    - uses: actions/checkout@v2
+    - name: Install dependencies
+      run: |
+          sudo apt-get update
+          sudo apt-get install clang qt6-base-dev libglvnd-dev libeigen3-dev zlib1g-dev libfftw3-dev ninja-build
+
+    - name: Checkout code
+      uses: actions/checkout@v2
+
     - name: Download version file
       uses: actions/download-artifact@v2
       with:

pyproject.toml

@@ -50,6 +50,7 @@ test = [
     "pytest-xdist",
     "pytest-rerunfailures",
     "codecov",
+    "fileformats-medimage_mrtrix3-extras",
 ]
 
 [tool.hatch.version]

related-packages/fileformats-extras/pyproject.toml

@@ -10,6 +10,7 @@ requires-python = ">=3.8"
 dependencies = [
     "fileformats >= 0.8",
     "fileformats-medimage-mrtrix3",
+    "medimages4tests",
     "pydra >= 0.22.0",
 ]
 license = { file = "LICENSE" }
@@ -34,13 +35,7 @@ dynamic = ["version"]
 
 [project.optional-dependencies]
 dev = ["black", "pre-commit", "codespell", "flake8", "flake8-pyproject"]
-test = [
-    "pytest >=6.2.5",
-    "pytest-env>=0.6.2",
-    "pytest-cov>=2.12.1",
-    "medimages4tests",
-    "codecov",
-]
+test = ["pytest >=6.2.5", "pytest-env>=0.6.2", "pytest-cov>=2.12.1", "codecov"]
 
 converters = []