upped fileformats dependency versions and raise erorrs in auto-gen of interfaces

Author: tclose

.github/workflows/ci-cd.yml

@@ -120,7 +120,7 @@ jobs:
           $MRTRIX_INSTALL/bin
           $(pwd)
           $MRTRIX_VERSION
-          --log-errors
+          --raise-errors
           --latest
       - name: Upload MRtrix3 install
         uses: actions/upload-artifact@v4

related-packages/fileformats-extras/pyproject.toml

@@ -8,7 +8,8 @@ description = "Classes for representing different file formats in Python classes
 readme = "README.rst"
 requires-python = ">=3.8"
 dependencies = [
-    "fileformats >= 0.8",
+    "fileformats >=0.15a3",
+    "fileformats-medimage >=0.10.0a1",
     "fileformats-medimage-mrtrix3 >=3.0.4a5",
     "medimages4tests",
     "pydra >= 0.23.0",

related-packages/fileformats/pyproject.toml

@@ -7,21 +7,13 @@ name = "fileformats-medimage-mrtrix3"
 description = "Classes for representing different file formats in Python classes for use in type hinting in data workflows"
 readme = "README.rst"
 requires-python = ">=3.8"
-dependencies = [
-    "fileformats >= 0.8.5",
-    "fileformats-medimage >= 0.4.4"
-]
-license = {file = "LICENSE"}
-authors = [
-    {name = "Thomas G. Close", email = "[email protected]"},
-]
+dependencies = ["fileformats >=0.15a3", "fileformats-medimage >= 0.10.0a1"]
+license = { file = "LICENSE" }
+authors = [{ name = "Thomas G. Close", email = "[email protected]" }]
 maintainers = [
-    {name = "Thomas G. Close", email = "[email protected]"},
+    { name = "Thomas G. Close", email = "[email protected]" },
 ] # Ideally this would be the generic MRtrix developers authors list, but will leave it as me for now
-keywords = [
-    "file formats",
-    "data",
-]
+keywords = ["file formats", "data"]
 classifiers = [
     "Development Status :: 3 - Alpha",
     "Environment :: Console",
@@ -39,19 +31,8 @@ classifiers = [
 dynamic = ["version"]
 
 [project.optional-dependencies]
-dev = [
-    "black",
-    "pre-commit",
-    "codespell",
-    "flake8",
-    "flake8-pyproject",
-]
-test = [
-    "pytest >=6.2.5",
-    "pytest-env>=0.6.2",
-    "pytest-cov>=2.12.1",
-    "codecov",
-]
+dev = ["black", "pre-commit", "codespell", "flake8", "flake8-pyproject"]
+test = ["pytest >=6.2.5", "pytest-env>=0.6.2", "pytest-cov>=2.12.1", "codecov"]
 
 [project.urls]
 repository = "https://github.com/MRtrix3/mrtrix3"
@@ -75,9 +56,7 @@ ignore-words = ".codespell-ignorewords"
 
 [tool.flake8]
 doctests = true
-per-file-ignores = [
-    "__init__.py:F401"
-]
+per-file-ignores = ["__init__.py:F401"]
 max-line-length = 88
 select = "C,E,F,W,B,B950"
 extend-ignore = ['E203', 'E501', 'E129']