diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 838a757..624d7cb 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -2,14 +2,14 @@ # See https://pre-commit.com/hooks.html for more hooks repos: - repo: https://github.com/pre-commit/pre-commit-hooks - rev: v4.3.0 + rev: v6.0.0 hooks: - id: trailing-whitespace - id: end-of-file-fixer - id: check-yaml - id: check-added-large-files -- repo: https://github.com/psf/black - rev: 22.6.0 +- repo: https://github.com/psf/black-pre-commit-mirror + rev: 25.9.0 hooks: - id: black exclude: (_version\.py|versioneer\.py) diff --git a/pydra/tasks/mrtrix3/__init__.py b/pydra/tasks/mrtrix3/__init__.py index df4106e..db51604 100644 --- a/pydra/tasks/mrtrix3/__init__.py +++ b/pydra/tasks/mrtrix3/__init__.py @@ -2,4 +2,5 @@ >>> import pydra >>> import pydra.tasks.mrtrix3 """ + from ._version import __version__ diff --git a/pydra/tasks/mrtrix3/v3_1/mredit.py b/pydra/tasks/mrtrix3/v3_1/mredit.py index d1b3cb3..7f54816 100644 --- a/pydra/tasks/mrtrix3/v3_1/mredit.py +++ b/pydra/tasks/mrtrix3/v3_1/mredit.py @@ -58,13 +58,13 @@ class MrEdit(shell.Task["MrEdit.Outputs"]): help="""fill one or more planes on a particular image axis""", sep=" ", ) - sphere: MultiInputObj[ - tuple[list[float], list[float], list[float]] - ] | None = shell.arg( - default=None, - argstr="-sphere", - help="""draw a sphere with radius in mm""", - sep=" ", + sphere: MultiInputObj[tuple[list[float], list[float], list[float]]] | None = ( + shell.arg( + default=None, + argstr="-sphere", + help="""draw a sphere with radius in mm""", + sep=" ", + ) ) voxel: MultiInputObj[tuple[list[float], list[float]]] | None = shell.arg( default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/mrregister.py b/pydra/tasks/mrtrix3/v3_1/mrregister.py index 8028064..56c9140 100644 --- a/pydra/tasks/mrtrix3/v3_1/mrregister.py +++ b/pydra/tasks/mrtrix3/v3_1/mrregister.py @@ -427,17 +427,17 @@ class Outputs(shell.Outputs): path_template="transformed.mif", help="""image1 after registration transformed and regridded to the space of image2. Note that -transformed needs to be repeated for each contrast if multi-contrast registration is used.""", ) - transformed_midway: MultiInputObj[ - tuple[ImageOut, ImageOut] - ] | bool | None = shell.outarg( - default=None, - argstr="-transformed_midway", - path_template=( - "transformed_midway0.mif", - "transformed_midway1.mif", - ), - help="""image1 and image2 after registration transformed and regridded to the midway space. Note that -transformed_midway needs to be repeated for each contrast if multi-contrast registration is used.""", - sep=" ", + transformed_midway: MultiInputObj[tuple[ImageOut, ImageOut]] | bool | None = ( + shell.outarg( + default=None, + argstr="-transformed_midway", + path_template=( + "transformed_midway0.mif", + "transformed_midway1.mif", + ), + help="""image1 and image2 after registration transformed and regridded to the midway space. Note that -transformed_midway needs to be repeated for each contrast if multi-contrast registration is used.""", + sep=" ", + ) ) rigid: File | bool | None = shell.outarg( default=None,