added sge test

Author: tclose

.coveragerc

@@ -1,2 +1,5 @@
 [run]
 branch = True
+omit =
+    */tests/*
+    conftest.py

.github/workflows/ci-cd.yml

@@ -222,6 +222,62 @@ jobs:
         token: ${{ secrets.CODECOV_TOKEN }}
         files: ./cov.xml
 
+  test-sge:
+    needs: ["build"]
+    strategy:
+      matrix:
+        python-version: [3.11]
+      fail-fast: false
+    runs-on: ubuntu-latest
+    env:
+      VERSION: 8.1.9
+    steps:
+      - name: Install system packages
+        run: |
+          sudo apt-get update
+          sudo apt-get install -y build-essential libssl-dev libncurses5-dev wget
+      - name: Download SGE
+        run: |
+          mkdir -p ~/sge-build && cd ~/sge-build
+          wget -c https://github.com/sge-network/sge/archive/refs/tags/v${{ env.VERSION }}.tar.gz
+          tar zxvf v${{ env.VERSION }}.tar.gz
+          cd sge-v${{ env.VERSION }}
+      - name: Prepare build
+        run: |
+          sudo mkdir -p /opt/sge
+          sudo useradd -r -m -U -d /home/sgeadmin -s /bin/bash -c "SGE Admin" sgeadmin
+          sudo usermod -a -G sudo sgeadmin
+      - name: Build SGE
+        run: |
+          sh scripts/bootstrap.sh && ./aimk -no-qmon -no-qtcsh && ./aimk -
+      - name: Install SGE
+        run: |
+          echo Y | ./scripts/distinst -local -allall -libs -noexit
+          sudo touch /opt/sge/default/common/settings.sh
+          sudo ln -s /opt/sge/default/common/settings.sh /etc/profile.d/sge_settings.sh
+          echo . /etc/profile.d/sge_settings.sh >> /etc/bash.bashrc
+      - name: Checkout repository
+        uses: actions/checkout@v4
+        with:
+          repository: ${{ github.repository }}
+      - name: Fetch tags
+        run: git fetch --prune --unshallow
+      - name: Setup Python version ${{ matrix.python-version }}
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: Install package
+        run: |
+          pip install -e ".[test]"
+      - name: Run tests for Dask
+        run: |
+          pytest -v pydra/engine/tests/test_submitter.py --only-worker=sge --rootdir pydra --cov pydra --cov-config .coveragerc --cov-report xml:cov.xml
+      - name: Upload coverage to Codecov
+        uses: codecov/codecov-action@v2
+        with:
+          fail_ci_if_error: true
+          token: ${{ secrets.CODECOV_TOKEN }}
+
   # test-sge:
   #   needs: ['build']
   #   strategy:

empty-docs/index.rst

@@ -1,5 +1,5 @@
 .. meta::
    :http-equiv=Refresh: 0; url='https://nipype.github.io/pydra/'
 
-The docs for Nipype have been moved to GitHub, if you aren't redirected automatically
-go to https://nipype.github.io/pydra/.
+The docs for Pydra have been moved to GitHub pages, if you aren't redirected automatically
+go to `https://nipype.github.io/pydra/ <https://nipype.github.io/pydra/>`__.

pydra/engine/state.py

@@ -122,25 +122,6 @@ def __str__(self):
             f"and combiner: {self.combiner}"
         )
 
-    @property
-    def names(self):
-        """Return the names of the states."""
-        previous_states_keys = {
-            f"_{v.name}": v.keys_final for v in self.inner_inputs.values()
-        }
-        names = []
-        # iterating splitter_rpn
-        for token in self.splitter_rpn:
-            if token in [".", "*"]:  # token is one of the input var
-                continue
-                # adding variable to the stack
-            if token.startswith("_"):
-                new_keys = previous_states_keys[token]
-                names += new_keys
-            else:
-                names.append(token)
-        return names
-
     def depth(self, before_combine: bool = False) -> int:
         """Return the number of splits of the state, i.e. the number nested
         state arrays to wrap around the type of lazy out fields