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‎new-docs/source/howto/create-task-package.ipynb‎

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{
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"cells": [
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{
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"cell_type": "markdown",
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"metadata": {},
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"source": [
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"# Create a task package\n",
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"\n",
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"Work in progress..."
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]
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},
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{
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"cell_type": "markdown",
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"metadata": {},
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"source": []
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}
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],
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"metadata": {
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"language_info": {
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"name": "python"
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}
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},
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"nbformat": 4,
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"nbformat_minor": 2
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"cells": [
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{
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"cell_type": "markdown",
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"metadata": {},
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"source": [
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"# Create a task package\n",
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"\n",
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"Work in progress..."
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]
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},
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{
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"cell_type": "markdown",
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"metadata": {},
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"source": []
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}
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],
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"metadata": {
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"language_info": {
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"name": "python"
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}
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},
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"nbformat": 4,
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"nbformat_minor": 2
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}

‎new-docs/source/tutorial/1-getting-started.ipynb‎

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},
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {},
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},
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{
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"cell_type": "code",
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"metadata": {},
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{
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"name": "stdout",
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"output_type": "stream",
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"text": [
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"/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif\n",
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"/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif\n",
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"/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif\n",
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"/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif\n",
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"/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif\n",
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"/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif\n",
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"/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif\n",
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"/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif\n",
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"/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif\n",
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"/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif\n"
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]
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}
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],
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"outputs": [],
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"source": [
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"from pydra.tasks.mrtrix3.v3_0 import MrGrid\n",
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"\n",
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif\n",
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"/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif\n",
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"/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif\n",
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"/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif\n",
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"/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif\n",
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"/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif\n",
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"/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif\n",
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"/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif\n",
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"/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif\n",
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"/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif\n"
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]
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}
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],
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"outputs": [],
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},
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"cell_type": "code",
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"metadata": {},
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"output_type": "stream",
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"text": [
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"/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif\n",
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"/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif\n",
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"/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif\n",
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"/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif\n",
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"/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif\n",
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"/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif\n",
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"/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif\n",
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"/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif\n",
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"/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif\n",
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"/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif\n"
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]
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}
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],
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"outputs": [],
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"source": [
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"from pydra.tasks.mrtrix3.v3_0 import MrGrid\n",
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"\n",
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"text": [
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"SplitOutputs(out_file=[ImageFormat('/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif'), ImageFormat('/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif'), ImageFormat('/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif'), ImageFormat('/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif'), ImageFormat('/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif'), ImageFormat('/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif'), ImageFormat('/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif'), ImageFormat('/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif'), ImageFormat('/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif'), ImageFormat('/Users/tclose/Library/Caches/pydra/0.24.dev36+g0deadc43/run-cache/MrGrid_9ecfc891341bf304360011011e2541ab/out_file.mif')], return_code=[0, 0, 0, 0, 0, 0, 0, 0, 0, 0], stderr=['\\x1b[?7l\\rmrgrid: [ 18%] reslicing \"/var/folders/mz/yn83q2fd3s758w1j75d2nnw80000gn/T/tmpz3lekmr7/nifti/o7hRfp9mNCCElZfobqz3xhq9.nii\"...\\x1b[0K\\x1b[?7h\\x1b[?7l\\rmrgrid: [100%] reslicing \"/var/folders/mz/yn83q2fd3s758w1j75d2nnw80000gn/T/tmpz3lekmr7/nifti/o7hRfp9mNCCElZfobqz3xhq9.nii\"...\\x1b[0K\\x1b[?7h\\rmrgrid: [100%] reslicing \"/var/folders/mz/yn83q2fd3s758w1j75d2nnw80000gn/T/tmpz3lekmr7/nifti/o7hRfp9mNCCElZfobqz3xhq9.nii\"\\x1b[0K\\n', '\\x1b[?7l\\rmrgrid: [ 18%] reslicing \"/var/folders/mz/yn83q2fd3s758w1j75d2nnw80000gn/T/tmpz3lekmr7/nifti/o7hRfp9mNCCElZfobqz3xhq9.nii\"...\\x1b[0K\\x1b[?7h\\x1b[?7l\\rmrgrid: [100%] reslicing \"/var/folders/mz/yn83q2fd3s758w1j75d2nnw80000gn/T/tmpz3lekmr7/nifti/o7hRfp9mNCCElZfobqz3xhq9.nii\"...\\x1b[0K\\x1b[?7h\\rmrgrid: [100%] reslicing \"/var/folders/mz/yn83q2fd3s758w1j75d2nnw80000gn/T/tmpz3lekmr7/nifti/o7hRfp9mNCCElZfobqz3xhq9.nii\"\\x1b[0K\\n', '\\x1b[?7l\\rmrgrid: [ 18%] reslicing \"/var/folders/mz/yn83q2fd3s758w1j75d2nnw80000gn/T/tmpz3lekmr7/nifti/o7hRfp9mNCCElZfobqz3xhq9.nii\"...\\x1b[0K\\x1b[?7h\\x1b[?7l\\rmrgrid: [100%] reslicing \"/var/folders/mz/yn83q2fd3s758w1j75d2nnw80000gn/T/tmpz3lekmr7/nifti/o7hRfp9mNCCElZfobqz3xhq9.nii\"...\\x1b[0K\\x1b[?7h\\rmrgrid: [100%] reslicing \"/var/folders/mz/yn83q2fd3s758w1j75d2nnw80000gn/T/tmpz3lekmr7/nifti/o7hRfp9mNCCElZfobqz3xhq9.nii\"\\x1b[0K\\n', '\\x1b[?7l\\rmrgrid: [ 18%] reslicing \"/var/folders/mz/yn83q2fd3s758w1j75d2nnw80000gn/T/tmpz3lekmr7/nifti/o7hRfp9mNCCElZfobqz3xhq9.nii\"...\\x1b[0K\\x1b[?7h\\x1b[?7l\\rmrgrid: [100%] reslicing \"/var/folders/mz/yn83q2fd3s758w1j75d2nnw80000gn/T/tmpz3lekmr7/nifti/o7hRfp9mNCCElZfobqz3xhq9.nii\"...\\x1b[0K\\x1b[?7h\\rmrgrid: [100%] reslicing \"/var/folders/mz/yn83q2fd3s758w1j75d2nnw80000gn/T/tmpz3lekmr7/nifti/o7hRfp9mNCCElZfobqz3xhq9.nii\"\\x1b[0K\\n', '\\x1b[?7l\\rmrgrid: [ 18%] reslicing \"/var/folders/mz/yn83q2fd3s758w1j75d2nnw80000gn/T/tmpz3lekmr7/nifti/o7hRfp9mNCCElZfobqz3xhq9.nii\"...\\x1b[0K\\x1b[?7h\\x1b[?7l\\rmrgrid: [100%] reslicing \"/var/folders/mz/yn83q2fd3s758w1j75d2nnw80000gn/T/tmpz3lekmr7/nifti/o7hRfp9mNCCElZfobqz3xhq9.nii\"...\\x1b[0K\\x1b[?7h\\rmrgrid: [100%] reslicing \"/var/folders/mz/yn83q2fd3s758w1j75d2nnw80000gn/T/tmpz3lekmr7/nifti/o7hRfp9mNCCElZfobqz3xhq9.nii\"\\x1b[0K\\n', '\\x1b[?7l\\rmrgrid: [ 18%] reslicing \"/var/folders/mz/yn83q2fd3s758w1j75d2nnw80000gn/T/tmpz3lekmr7/nifti/o7hRfp9mNCCElZfobqz3xhq9.nii\"...\\x1b[0K\\x1b[?7h\\x1b[?7l\\rmrgrid: [100%] reslicing \"/var/folders/mz/yn83q2fd3s758w1j75d2nnw80000gn/T/tmpz3lekmr7/nifti/o7hRfp9mNCCElZfobqz3xhq9.nii\"...\\x1b[0K\\x1b[?7h\\rmrgrid: [100%] reslicing \"/var/folders/mz/yn83q2fd3s758w1j75d2nnw80000gn/T/tmpz3lekmr7/nifti/o7hRfp9mNCCElZfobqz3xhq9.nii\"\\x1b[0K\\n', '\\x1b[?7l\\rmrgrid: [ 18%] reslicing \"/var/folders/mz/yn83q2fd3s758w1j75d2nnw80000gn/T/tmpz3lekmr7/nifti/o7hRfp9mNCCElZfobqz3xhq9.nii\"...\\x1b[0K\\x1b[?7h\\x1b[?7l\\rmrgrid: [100%] reslicing \"/var/folders/mz/yn83q2fd3s758w1j75d2nnw80000gn/T/tmpz3lekmr7/nifti/o7hRfp9mNCCElZfobqz3xhq9.nii\"...\\x1b[0K\\x1b[?7h\\rmrgrid: [100%] reslicing \"/var/folders/mz/yn83q2fd3s758w1j75d2nnw80000gn/T/tmpz3lekmr7/nifti/o7hRfp9mNCCElZfobqz3xhq9.nii\"\\x1b[0K\\n', '\\x1b[?7l\\rmrgrid: [ 18%] reslicing \"/var/folders/mz/yn83q2fd3s758w1j75d2nnw80000gn/T/tmpz3lekmr7/nifti/o7hRfp9mNCCElZfobqz3xhq9.nii\"...\\x1b[0K\\x1b[?7h\\x1b[?7l\\rmrgrid: [100%] reslicing \"/var/folders/mz/yn83q2fd3s758w1j75d2nnw80000gn/T/tmpz3lekmr7/nifti/o7hRfp9mNCCElZfobqz3xhq9.nii\"...\\x1b[0K\\x1b[?7h\\rmrgrid: [100%] reslicing \"/var/folders/mz/yn83q2fd3s758w1j75d2nnw80000gn/T/tmpz3lekmr7/nifti/o7hRfp9mNCCElZfobqz3xhq9.nii\"\\x1b[0K\\n', '\\x1b[?7l\\rmrgrid: [ 18%] reslicing \"/var/folders/mz/yn83q2fd3s758w1j75d2nnw80000gn/T/tmpz3lekmr7/nifti/o7hRfp9mNCCElZfobqz3xhq9.nii\"...\\x1b[0K\\x1b[?7h\\x1b[?7l\\rmrgrid: [100%] reslicing \"/var/folders/mz/yn83q2fd3s758w1j75d2nnw80000gn/T/tmpz3lekmr7/nifti/o7hRfp9mNCCElZfobqz3xhq9.nii\"...\\x1b[0K\\x1b[?7h\\rmrgrid: [100%] reslicing \"/var/folders/mz/yn83q2fd3s758w1j75d2nnw80000gn/T/tmpz3lekmr7/nifti/o7hRfp9mNCCElZfobqz3xhq9.nii\"\\x1b[0K\\n', '\\x1b[?7l\\rmrgrid: [ 18%] reslicing \"/var/folders/mz/yn83q2fd3s758w1j75d2nnw80000gn/T/tmpz3lekmr7/nifti/o7hRfp9mNCCElZfobqz3xhq9.nii\"...\\x1b[0K\\x1b[?7h\\x1b[?7l\\rmrgrid: [100%] reslicing \"/var/folders/mz/yn83q2fd3s758w1j75d2nnw80000gn/T/tmpz3lekmr7/nifti/o7hRfp9mNCCElZfobqz3xhq9.nii\"...\\x1b[0K\\x1b[?7h\\rmrgrid: [100%] reslicing \"/var/folders/mz/yn83q2fd3s758w1j75d2nnw80000gn/T/tmpz3lekmr7/nifti/o7hRfp9mNCCElZfobqz3xhq9.nii\"\\x1b[0K\\n'], stdout=['', '', '', '', '', '', '', '', '', ''])\n"
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]
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}
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],
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"outputs": [],
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"source": [
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"from pydra.utils import default_run_cache_dir\n",
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"\n",

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