MAINT: Fix codespell errors

Author: ghisvail

docs/changes.rst

@@ -9,7 +9,7 @@ Release Notes
 * adding simple validators to input spec (using ``attr.validator``)
 * adding ``create_dotfile`` for workflows, that creates graphs as dotfiles (can convert to other formats if dot available)
 * adding a simple user guide with ``input_spec`` description
-* expanding docstrings for ``State``, ``audit`` and ``messanger``
+* expanding docstrings for ``State``, ``audit`` and ``messenger``
 * updating syntax to newer python
 
 0.7.0

pydra/engine/core.py

@@ -60,7 +60,7 @@ class TaskBase:
     """
     A base structure for the nodes in the processing graph.
 
-    Tasks are a generic compute step from which both elemntary tasks and
+    Tasks are a generic compute step from which both elementary tasks and
     :class:`Workflow` instances inherit.
 
     """
@@ -546,7 +546,7 @@ def _run(self, rerun=False, environment=None, **kwargs):
                 self.hooks.post_run_task(self, result)
                 self.audit.finalize_audit(result)
                 save(output_dir, result=result, task=self)
-                # removing the additional file with the chcksum
+                # removing the additional file with the checksum
                 (self.cache_dir / f"{self.uid}_info.json").unlink()
                 # # function etc. shouldn't change anyway, so removing
                 orig_inputs = {
@@ -1252,7 +1252,7 @@ async def _run(self, submitter=None, rerun=False, **kwargs):
                 self.hooks.post_run_task(self, result)
                 self.audit.finalize_audit(result=result)
                 save(output_dir, result=result, task=self)
-                # removing the additional file with the chcksum
+                # removing the additional file with the checksum
                 (self.cache_dir / f"{self.uid}_info.json").unlink()
                 os.chdir(cwd)
         self.hooks.post_run(self, result)

pydra/engine/environments.py

@@ -6,7 +6,7 @@
 class Environment:
     """
     Base class for environments that are used to execute tasks.
-    Right now it is asssumed that the environment, including container images,
+    Right now it is assumed that the environment, including container images,
     are available and are not removed at the end
     TODO: add setup and teardown methods
     """

pydra/engine/graph.py

@@ -499,7 +499,7 @@ def _create_dotfile_single_graph(self, nodes, edges):
         return dotstr
 
     def export_graph(self, dotfile, ext="png"):
-        """exporting dotfile to other format, equires the dot command"""
+        """exporting dotfile to other formats requires the dot command"""
         available_ext = [
             "bmp",
             "canon",

pydra/engine/tests/test_shelltask.py

@@ -4815,7 +4815,7 @@ def formatter_3(in1, in3):
         == str(excinfo.value)
     )
 
-    # chcking if field value is accessible when None
+    # checking if field value is accessible when None
     def formatter_5(field):
         assert field == "-t test"
         # formatter must return a string
@@ -4832,7 +4832,7 @@ def formatter_5(field):
     )
     assert shelly.cmdline == "exec -t test"
 
-    # chcking if field value is accessible when None
+    # checking if field value is accessible when None
     def formatter_4(field):
         assert field is None
         # formatter must return a string