fixed test job deps

Author: tclose

.github/workflows/ci-cd.yml

@@ -212,6 +212,51 @@ jobs:
         docker exec slurm bash -c "codecov --root /pydra -f /pydra/cov.xml -F unittests"
         docker rm -f slurm
 
+  # test-sge:
+  #   needs: ['build']
+  #   strategy:
+  #     matrix:
+  #       python-version: [3.11.5]
+  #     fail-fast: false
+  #   runs-on: ubuntu-latest
+  #   env:
+  #     DOCKER_IMAGE: kgutwin/simple-sge
+  #   steps:
+  #   - name: Disable etelemetry
+  #     run: echo "NO_ET=TRUE" >> $GITHUB_ENV
+  #   - uses: actions/checkout@v4
+  #   - name: Fetch tags
+  #     run: git fetch --prune --unshallow
+  #   - name: Pull docker image
+  #     run: |
+  #       docker pull $DOCKER_IMAGE
+  #       # Have image running in the background
+  #       docker run `bash <(curl -s https://codecov.io/env)` -itd -h sgectl --cap-add sys_admin -d --name sge -v `pwd`:/pydra -e NO_ET=$NO_ET $DOCKER_IMAGE
+  #   - name: Configure SGE
+  #     run: |
+  #       echo "Allowing ports/daemons time to start" && sleep 10
+  #       docker exec sge bash -c "source /etc/profile.d/sge_settings.sh && qconf -as sgectl"
+  #       docker exec sge bash -c "source /etc/profile.d/sge_settings.sh && qconf -mattr queue slots 4 all.q"
+  #       docker exec sge bash -c "source /etc/profile.d/sge_settings.sh && qstat"
+  #   - name: Setup Python
+  #     run: |
+  #       docker exec sge bash -c "echo $NO_ET"
+  #       docker exec sge bash -c "ls -la && echo list top level dir"
+  #       docker exec sge bash -c "ls -la /pydra && echo list pydra dir"
+  #       if [[ "${{ matrix.python-version }}" == "3.11.5" ]]; then
+  #           docker exec sge bash -c "CONFIGURE_OPTS=\"-with-openssl=/opt/openssl\" pyenv install -v 3.11.5"
+  #       fi
+  #       docker exec sge bash -c "pyenv global ${{ matrix.python-version }}"
+  #       docker exec sge bash -c "pip install --upgrade pip && pip install -e /pydra[test,psij] && python -c 'import pydra.engine; print(pydra.engine.__version__)'"
+  #   - name: Run pytest
+  #     run: |
+  #       docker exec sge bash -c "pytest /pydra/pydra/engine/tests/test_submitter.py --rootdir /pydra/pydra --only-worker=sge --color=yes -vs --cov pydra --cov-config /pydra/.coveragerc --cov-report xml:/pydra/cov.xml"
+  #   - name: Upload to codecov
+  #     run: |
+  #       docker exec sge bash -c "pip install urllib3==1.26.6"
+  #       docker exec sge bash -c "codecov --root /pydra -f /pydra/cov.xml -F unittests"
+  #       docker rm -f sge
+
   build-docs:
     needs: ['build']
     runs-on: ubuntu-latest
@@ -283,7 +328,7 @@ jobs:
         path: docs/build/html
 
   deploy:
-    needs: [build-docs, test, test-dask, test-singularity, test-slurm]
+    needs: [build-docs, test, test-workers, test-singularity, test-slurm]
     runs-on: ubuntu-latest
     steps:
     - name: Download dist