CI: Update build steps in workflows

Author: ghisvail

.circleci/config.yml

@@ -46,7 +46,9 @@ jobs:
       - checkout
       - run:
           name: Install deps
-          command: pip install --no-cache-dir -r docs/requirements.txt
+          command: |
+            pip install --upgrade pip
+            pip install --no-cache-dir .[doc]
       - run:
           name: Build only this commit
           command: make -C docs SPHINXOPTS="-W" BUILDDIR="_build/no_version_html" SPHINX_APIDOC_OPTIONS="members,undoc-members,show-inheritance,noindex" html

.github/workflows/publish.yml

@@ -20,12 +20,12 @@ jobs:
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip
-        pip install setuptools wheel twine
+        pip install build twine
 
     - name: Build and publish
       env:
         TWINE_USERNAME: __token__
         TWINE_PASSWORD: ${{ secrets.PYPI_API_TOKEN }}
       run: |
-        python setup.py bdist_wheel
+        python -m build
         twine upload dist/*

.github/workflows/testsingularity.yml

@@ -53,7 +53,7 @@ jobs:
         with:
           python-version: ${{ matrix.python-version }}
       - name: Update build tools
-        run: python -m pip install --upgrade pip setuptools
+        run: python -m pip install --upgrade pip
 
 
       - name: Checkout Pydra repo

.github/workflows/testslurm.yml

@@ -38,7 +38,7 @@ jobs:
         docker exec slurm bash -c "echo $NO_ET"
         docker exec slurm bash -c "ls -la && echo list top level dir"
         docker exec slurm bash -c "ls -la /pydra && echo list pydra dir"
-        docker exec slurm bash -c "pip install -e /pydra[test] && python -c 'import pydra; print(pydra.__version__)'"
+        docker exec slurm bash -c "pip install --upgrade pip && pip install -e /pydra[test] && python -c 'import pydra; print(pydra.__version__)'"
     - name: Run pytest
       run: docker exec slurm bash -c "pytest --color=yes -vs -n auto --cov pydra --cov-config /pydra/.coveragerc --cov-report xml:/pydra/cov.xml --doctest-modules /pydra/pydra"
     - name: Upload to codecov