formatted notebook

Author: tclose

new-docs/source/tutorial/2-advanced-execution.ipynb

@@ -24,6 +24,7 @@
    "outputs": [],
    "source": [
     "import nest_asyncio\n",
+    "\n",
     "nest_asyncio.apply()"
    ]
   },
@@ -201,17 +202,17 @@
     "nifti_files = [Nifti1.sample(nifti_dir, seed=i) for i in range(10)]\n",
     "\n",
     "VOX_SIZES = [\n",
-    "        (0.5, 0.5, 0.5),\n",
-    "        (0.25, 0.25, 0.25),\n",
-    "        (0.1, 0.1, 0.1),\n",
-    "        (0.35, 0.35, 0.35),\n",
-    "        (0.1, 0.1, 0.1),\n",
-    "        (0.5, 0.5, 0.5),\n",
-    "        (0.25, 0.25, 0.25),\n",
-    "        (0.2, 0.2, 0.2),\n",
-    "        (0.35, 0.35, 0.35),\n",
-    "        (0.1, 0.1, 0.1),\n",
-    "    ]\n",
+    "    (0.5, 0.5, 0.5),\n",
+    "    (0.25, 0.25, 0.25),\n",
+    "    (0.1, 0.1, 0.1),\n",
+    "    (0.35, 0.35, 0.35),\n",
+    "    (0.1, 0.1, 0.1),\n",
+    "    (0.5, 0.5, 0.5),\n",
+    "    (0.25, 0.25, 0.25),\n",
+    "    (0.2, 0.2, 0.2),\n",
+    "    (0.35, 0.35, 0.35),\n",
+    "    (0.1, 0.1, 0.1),\n",
+    "]\n",
     "\n",
     "mrgrid_varying_vox = MrGrid(operation=\"regrid\").split(\n",
     "    (\"in_file\", \"voxel\"),\n",
@@ -300,7 +301,7 @@
     "with submitter:\n",
     "    result4 = submitter(mrgrid_varying_vox4)\n",
     "\n",
-    "# The cache directory for the new run is different \n",
+    "# The cache directory for the new run is different\n",
     "assert result4.output_dir != result1.output_dir"
    ]
   },
@@ -331,7 +332,7 @@
     "\n",
     "# Instantiate the task definition, \"splitting\" over all NIfTI files in the test directory\n",
     "# by splitting the \"input\" input field over all files in the directory\n",
-    "mrgrid = MrGrid(in_file=nifti_file, operation=\"regrid\", voxel=(0.5,0.5,0.5))\n",
+    "mrgrid = MrGrid(in_file=nifti_file, operation=\"regrid\", voxel=(0.5, 0.5, 0.5))\n",
     "\n",
     "# Run the task to resample all NIfTI files\n",
     "outputs = mrgrid(environment=Docker(image=\"mrtrix3/mrtrix3\", tag=\"latest\"))\n",
@@ -375,20 +376,27 @@
     "import os\n",
     "import platform\n",
     "\n",
+    "\n",
     "def notify_task_completion(task: Task, result: Result):\n",
     "    # Print a message to the terminal\n",
     "    print(f\"Task completed! Results are stored in {str(task.output_dir)!r}\")\n",
     "\n",
     "    # Platform-specific notifications\n",
     "    if platform.system() == \"Darwin\":  # macOS\n",
-    "        os.system('osascript -e \\'display notification \"Task has completed successfully!\" with title \"Task Notification\"\\'')\n",
+    "        os.system(\n",
+    "            'osascript -e \\'display notification \"Task has completed successfully!\" '\n",
+    "            'with title \"Task Notification\"\\''\n",
+    "        )\n",
     "    elif platform.system() == \"Linux\":  # Linux\n",
     "        os.system('notify-send \"Task Notification\" \"Task has completed successfully!\"')\n",
     "    elif platform.system() == \"Windows\":  # Windows\n",
     "        os.system('msg * \"Task has completed successfully!\"')\n",
     "\n",
+    "\n",
     "# Run the task to resample all NIfTI files\n",
-    "outputs = mrgrid(hooks=TaskHooks(post_run=notify_task_completion), cache_dir=tempfile.mkdtemp())\n",
+    "outputs = mrgrid(\n",
+    "    hooks=TaskHooks(post_run=notify_task_completion), cache_dir=tempfile.mkdtemp()\n",
+    ")\n",
     "\n",
     "# Print the locations of the output files\n",
     "pprint(outputs.out_file)"