Merge branch 'EBIvariation:master' into master

Author: nitin-ebi

Gruntfile.js

@@ -15,7 +15,7 @@ module.exports = function (grunt) {
         // Metadata.
         meta: {
             version: {
-                eva: '4.4.20'
+                eva: '4.4.23'
             },
             submissionTemplate: {
                 version: 'V1.1.5'

bower.json

@@ -1,6 +1,6 @@
 {
   "name": "eva-web",
-  "version": "4.4.20",
+  "version": "4.4.23",
   "homepage": "https://github.com/EBIvariation/eva-web",
   "authors": [
     "EVA development team <eva-helpdesk@ebi.ac.uk>"

package.json

@@ -1,6 +1,6 @@
 {
   "name": "commons",
-  "version": "4.4.20",
+  "version": "4.4.23",
   "description": "javascript commons",
   "repository": {
     "type": "git",

src/index.html

@@ -152,13 +152,6 @@ <h1><img src="img/eva_logo.png" style="margin-left:-10px;"/><a href="?Home" titl
 <div id="content" role="main" class="row">
     <section>
         <div id="main-content-area" class="columns">
-            <div class="callout alert" style="text-align: center; background-color: #feff9c; font-size: 15px">
-                <h6><b>EMBL-EBI User Survey 2025</b></h6>
-                We need your help! </br>
-                Has the EVA saved you time or effort? Please take 15 minutes to fill in a survey and help EMBL-EBI make the case for why open data resources are critical to life science research.</br>
-                Please take 10 minutes to fill in our annual user survey, and help us make the case for why sustaining open data resources is critical for life sciences research.</br>
-                Survey link: <a href="https://www.surveymonkey.com/r/QGFMBH8?channel=[webpage]" target=”_blank” >https://www.surveymonkey.com/r/QGFMBH8?channel=[webpage]</a>
-            </div>
             <div id="home-page" class="hide-div">
                 <nav aria-label="You are here:" role="navigation">
                     <ul class="breadcrumbs">
@@ -291,6 +284,7 @@ <h3><span class="icon icon-generic" data-icon="'" aria-hidden="true"></span> Pre
                                 <li>Prepare valid VCF file(s), which can be validated prior to submission using the <a href="https://github.com/EBIvariation/eva-sub-cli" target="_blank">eva-sub-cli tool</a>.</li>
                                 <li>Complete a <a href="https://raw.githubusercontent.com/EBIvariation/eva-sub-cli/main/eva_sub_cli/etc/EVA_Submission_template.xlsx" target="_blank">metadata template</a> describing the samples and analyses in your study. This can be validated alongside your VCF files with <a href="https://github.com/EBIvariation/eva-sub-cli" target="_blank">eva-sub-cli</a>. Please provide as much metadata as possible since this information is useful for downstream analysis and leads to increased dataset reuse. For reference, here is an <a href="https://raw.githubusercontent.com/EBIvariation/eva-sub-cli/main/eva_sub_cli/etc/EVA_Submission_Example.xlsx" target="_blank">example</a> of a completed metadata template.</li>
                                 <li>Please also note that the template requires the submitter to fill in some personal data, which will be used as described in our <a href="https://www.ebi.ac.uk/data-protection/privacy-notice/embl-ebi-public-website/" target="_blank">privacy notice</a>.</li>
+                                <li>If your submission contains human genotype data, then please provide a signed copy of our <a href="https://docs.google.com/document/d/1UaRmimAe919IZYIH55mDXMe-4sHsRVqaP4moqx2IYE4" target="_blank">Consent Statement</a> via email to <a href="mailto:eva-helpdesk@ebi.ac.uk">eva-helpdesk@ebi.ac.uk</a>. See our <a href="?Help#submissionPanel&link=consent-statement-for-human-genotype-data" target="_blank">help</a> section for more info.</li>
                             </ul>
                         </div>
                         <div class="arrow"></div>
@@ -720,6 +714,7 @@ <h5>Acknowledgement</h5>
                                 <li><a href="#submitted-data-held-privately">Can my submitted data be held privately at the EVA?</a></li>
                                 <li><a href="#what-data-is-brokered-to-dbsnp">Which data is brokered to DBSNP?</a></li>
                                 <li><a href="#how-do-we-deal-with-chromosome-name-diversity">How do we deal with chromosome or contig name diversity?</a></li>
+                                <li><a href="#consent-statement-for-human-genotype-data">Consent statement for human genotype data</a></li>
                             </ul>
                             <ul class="accordion" data-accordion>
                                 <div id="why-submit-data-to-eva">
@@ -924,6 +919,17 @@ <h5>Archive process</h5>
                                         </div>
                                     </li>
                                 </div>
+                                <div id="consent-statement-for-human-genotype-data">
+                                    <li class="accordion-item is-active" data-accordion-item>
+                                        <a class="accordion-title"><h5>Consent statement for human genotype data</h5></a>
+                                        <div class="accordion-content" data-tab-content>
+                                            <p>The EVA is an open access resource, and it is the submitter's responsibility to ensure their data is compliant with this policy.
+                                                If human genotype data is to be submitted then we request a <a href="https://docs.google.com/document/d/1UaRmimAe919IZYIH55mDXMe-4sHsRVqaP4moqx2IYE4" target="_blank">Consent Statement</a> to be completed prior to submission via email to <a href="mailto:eva-helpdesk@ebi.ac.uk">eva-helpdesk@ebi.ac.uk</a>.
+                                                Your submission will only be processed after receiving the consent statement. If your data contains allele frequencies and no genotypes then no consent statement is needed.
+                                                Please consider that if your data requires controlled access, an alternative EMBL-EBI service, the European Genome-phenome Archive (EGA; www.ebi.ac.uk/ega), will be more suitable for your submission.</p>
+                                        </div>
+                                    </li>
+                                </div>
                             </ul>
                         </div>
                         <div class="tabs-panel is-active" id="accessionPanel">