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- Specify a path for temp files
- Add G,g to filter
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README.rst

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@@ -22,48 +22,48 @@ Install from source
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.. code-block::
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python3 -m venv venv
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source venv/bin/activate
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python3 -m venv venv
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source venv/bin/activate
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python setup.py install
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python setup.py install
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Install from PyPi
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-----------------
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.. code-block::
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pip install py-ard
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pip install py-ard
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Example
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-------
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.. code-block:: python3
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from pyard import ARD
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from pyard import ARD
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# Initialize ARD object
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ard = ARD('3290')
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# Initialize ARD object
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ard = ARD('3290')
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# You can specify a data directory for temp files
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# ard = ard = ARD('3290', data_dir='/tmp/py-ard')
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# Initialize with latest DB
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ard = ARD()
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# Initialize with latest DB
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ard = ARD()
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allele = "A*01:01:01"
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allele = "A*01:01:01"
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ard.redux(allele, 'G')
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# >> 'A*01:01:01G'
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ard.redux(allele, 'G')
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# >> 'A*01:01:01G'
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ard.redux(allele, 'lg')
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# >> 'A*01:01g'
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ard.redux(allele, 'lg')
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# >> 'A*01:01g'
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ard.redux(allele, 'lgx')
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# 'A*01:01'
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ard.redux(allele, 'lgx')
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# 'A*01:01'
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ard_gl = ard.redux_gl("A*01:01/A*01:01N+A*02:AB^B*07:02+B*07:AB", "G")
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# >>> ard_gl
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# 'B*07:02:01G+B*07:02:01G^A*01:01:01G+A*02:01:01G/A*02:02'
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ard_gl = ard.redux_gl("A*01:01/A*01:01N+A*02:AB^B*07:02+B*07:AB", "G")
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# >>> ard_gl
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# 'B*07:02:01G+B*07:02:01G^A*01:01:01G+A*02:01:01G/A*02:02'
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