Merge pull request #359 from pbashyal-nmdp/major_refactor_2.0

Major refactor `2.0.0b2`

Author: mmaiers-nmdp

.github/workflows/python-tests.yml

@@ -41,6 +41,6 @@ jobs:
     - name: Run Unit Tests
       run: |
         # When run the first time, it'll build the library
-        python -m unittest tests.unit.test_pyard tests.unit.test_smart_sort
+        pytest
         # When run the second time, it should use the already installed library
-        python -m unittest tests.unit.test_pyard tests.unit.test_smart_sort
+        pytest

Dockerfile

@@ -4,7 +4,7 @@ LABEL MAINTAINER="Pradeep Bashyal"
 
 WORKDIR /app
 
-ARG PY_ARD_VERSION=2.0.0b1
+ARG PY_ARD_VERSION=2.0.0b2
 
 COPY requirements.txt /app
 RUN pip install --no-cache-dir --upgrade pip && \

MANIFEST.in

@@ -5,6 +5,7 @@ include HISTORY.rst
 include LICENSE
 include README.md
 include pyard/*.csv
+include pyard/loader/*.csv
 include requirements.txt
 include requirements-tests.txt
 

api-spec.yaml

@@ -2,7 +2,7 @@ openapi: 3.0.3
 info:
   title: ARD Reduction
   description: Reduce to ARD Level
-  version: "2.0.0b1"
+  version: "2.0.0b2"
 servers:
   - url: 'http://localhost:8080'
 tags:

pyard/__init__.py

@@ -1,5 +1,4 @@
 # -*- coding: utf-8 -*-
-
 #
 #    py-ard
 #    Copyright (c) 2023 Be The Match operated by National Marrow Donor Program. All Rights Reserved.
@@ -21,12 +20,15 @@
 #    > http://www.fsf.org/licensing/licenses/lgpl.html
 #    > http://www.opensource.org/licenses/lgpl-license.php
 #
+
+# exports for `pyard`
 from .blender import blender as dr_blender
+from .config import ARDConfig
 from .constants import DEFAULT_CACHE_SIZE
 from .misc import get_imgt_db_versions as db_versions
 
 __author__ = """NMDP Bioinformatics"""
-__version__ = "2.0.0b1"
+__version__ = "2.0.0b2"
 
 
 def init(