Merge pull request #47 from pbashyal-nmdp/issue39_P_and_G_group

G and P alleles

Author: mmaiers-nmdp

pyard/pyard.py

@@ -393,12 +393,15 @@ def redux(self, allele: str, ars_type: str) -> str:
         """
 
         # PERFORMANCE: precompiled regex
-        # dealing with leading HLA-
-
+        # dealing with leading 'HLA-'
         if self.HLA_regex.search(allele):
             hla, allele_name = allele.split("-")
             return "-".join(["HLA", self.redux(allele_name, ars_type)])
 
+        # Alleles ending with P or G are valid
+        if allele.endswith(('P', 'G')):
+            allele = allele[:-1]
+
         if ars_type == "G" and allele in self._G:
             if allele in self.dup_g:
                 return self.dup_g[allele]
@@ -498,6 +501,9 @@ def isvalid(self, allele: str) -> bool:
         if not ismac(allele):
             # PERFORMANCE: use hash instead of allele in "list"
             # return allele in self.valid
+            # Alleles ending with P or G are valid
+            if allele.endswith(('P', 'G')):
+                allele = allele[:-1]
             return self.valid_dict.get(allele, False)
         return True
 

setup.py

@@ -42,7 +42,7 @@
 
 setup(
     name='py-ard',
-    version='0.0.19',
+    version='0.0.20',
     description="ARD reduction for HLA with python",
     long_description=readme + '\n\n' + history,
     author="CIBMTR",