Merge branch 'master' of https://github.com/nmdp-bioinformatics/py-ard

Author: pbashyal-nmdp

.github/workflows/pythonpublish.yml

@@ -0,0 +1,31 @@
+# This workflows will upload a Python Package using Twine when a release is created
+# For more information see: https://help.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions#publishing-to-package-registries
+
+name: Upload Python Package
+
+on:
+  release:
+    types: [created]
+
+jobs:
+  deploy:
+
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v2
+    - name: Set up Python
+      uses: actions/setup-python@v1
+      with:
+        python-version: '3.x'
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install setuptools wheel twine
+    - name: Build and publish
+      env:
+        TWINE_USERNAME: ${{ secrets.PYPI_USERNAME }}
+        TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
+      run: |
+        python setup.py sdist bdist_wheel
+        twine upload dist/*

README.rst

@@ -3,8 +3,8 @@ py-ard
 ===============================
 
 
-.. image:: https://img.shields.io/pypi/v/pyard.svg
-        :target: https://pypi.python.org/pypi/pyard
+.. image:: https://img.shields.io/pypi/v/py-ard.svg
+        :target: https://pypi.python.org/pypi/py-ard
 
 .. image:: https://readthedocs.org/projects/pyars/badge/?version=latest
         :target: https://pyars.readthedocs.io/en/latest/?badge=latest

pyard/__init__.py

@@ -24,6 +24,5 @@
 from __future__ import absolute_import
 from .pyard import ARD
 
-__author__ = """Michael Halagan"""
-__email__ = '[email protected]'
-__version__ = '0.0.10'
+__author__ = """NMDP Bioinformatics"""
+__version__ = '0.0.13'

pyard/pyard.py

@@ -125,6 +125,7 @@ def __init__(self, dbversion: str='Latest',
         mac_file = data_dir + "/mac.txt"
         mac_pickle = data_dir + "/mac.pickle"
         broad_file = data_dir + "/dna_relshp.csv"
+        #print("mac_file:", mac_file)
 
         allele_url = "https://raw.githubusercontent.com/ANHIG/IMGTHLA/" \
                      + dbversion + "/Allelelist.txt"

setup.cfg

@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 0.0.10
+current_version = 0.0.13
 commit = True
 tag = True
 

setup.py

@@ -42,7 +42,7 @@
 
 setup(
     name='py-ard',
-    version='0.0.12',
+    version='0.0.16',
     description="ARD reduction for HLA with python",
     long_description=readme + '\n\n' + history,
     author="CIBMTR",