cleanup

Author: pbashyal-nmdp

pyard/ard.py

@@ -215,6 +215,7 @@ def _redux_allele(
                 # return allele with only first 2 field
                 redux_allele = ":".join(allele.split(":")[0:2])
             if redux_type == "lg":
+                # ARS suffix maybe used instead of g
                 if self._config["ARS_as_lg"]:
                     return redux_allele + "ARS"
                 # lg mode has g appended with lgx reduction

tests/features/allele.feature

@@ -7,12 +7,12 @@ Feature: Alleles
     Then the reduced allele is found to be <Redux Allele>
 
     Examples:
-      | Allele         | Level | Redux Allele      |
-      | C*02:02        | lg    | C*02:02g          |
-      | C*02:02        | lgx   | C*02:02           |
-      | C*02:10        | lg    | C*02:02g          |
-      | C*02:10        | lgx   | C*02:02           |
-      | C*06:17        | lgx   | C*06:02           |
+      | Allele  | Level | Redux Allele |
+      | C*02:02 | lg    | C*02:02g     |
+      | C*02:02 | lgx   | C*02:02      |
+      | C*02:10 | lg    | C*02:02g     |
+      | C*02:10 | lgx   | C*02:02      |
+      | C*06:17 | lgx   | C*06:02      |
 
   Scenario Outline: allele reduction
 
@@ -21,39 +21,39 @@ Feature: Alleles
     Then the reduced allele is found to be <Redux Allele>
 
     Examples:
-      | Allele         | Level | Redux Allele      |
-      | A*01:01:01     | G     | A*01:01:01G       |
-      | A*01:01:01     | lg    | A*01:01g          |
-      | A*01:01:01     | lgx   | A*01:01           |
+      | Allele         | Level | Redux Allele    |
+      | A*01:01:01     | G     | A*01:01:01G     |
+      | A*01:01:01     | lg    | A*01:01g        |
+      | A*01:01:01     | lgx   | A*01:01         |
 
-      | HLA-A*01:01:01 | G     | HLA-A*01:01:01G   |
-      | HLA-A*01:01:01 | lg    | HLA-A*01:01g      |
-      | HLA-A*01:01:01 | lgx   | HLA-A*01:01       |
+      | HLA-A*01:01:01 | G     | HLA-A*01:01:01G |
+      | HLA-A*01:01:01 | lg    | HLA-A*01:01g    |
+      | HLA-A*01:01:01 | lgx   | HLA-A*01:01     |
 
-      | DRB1*14:05:01  | lgx   | DRB1*14:05        |
-      | DRB1*14:05:01  | lg    | DRB1*14:05g       |
+      | DRB1*14:05:01  | lgx   | DRB1*14:05      |
+      | DRB1*14:05:01  | lg    | DRB1*14:05g     |
 
-      | DRB1*14:06:01  | lgx   | DRB1*14:06        |
-      | DRB1*14:06:01  | lg    | DRB1*14:06g       |
-      | C*02:02        | lg    | C*02:02g          |
-      | C*02:02        | lgx   | C*02:02           |
-      | C*02:10        | lg    | C*02:02g          |
-      | C*02:10        | lgx   | C*02:02           |
-      | C*06:17        | lgx   | C*06:17           |
+      | DRB1*14:06:01  | lgx   | DRB1*14:06      |
+      | DRB1*14:06:01  | lg    | DRB1*14:06g     |
+      | C*02:02        | lg    | C*02:02g        |
+      | C*02:02        | lgx   | C*02:02         |
+      | C*02:10        | lg    | C*02:02g        |
+      | C*02:10        | lgx   | C*02:02         |
+      | C*06:17        | lgx   | C*06:17         |
 
 
   Scenario Outline: allele reduction with ARS suffix
 
-    In `g` mode, use `ARS` prefix rather than `g`.
+  In `g` mode, use `ARS` prefix rather than `g`.
 
     Given the allele as <Allele>
     When reducing on the <Level> level with ARS suffix enabled
     Then the reduced allele is found to be <Redux Allele>
 
     Examples:
       | Allele         | Level | Redux Allele   |
-      | A*01:01:01     | lg     | A*01:01ARS     |
-      | HLA-A*01:01:01 | lg     | HLA-A*01:01ARS |
-      | DRB1*14:06:01  | lg     | DRB1*14:06ARS  |
-      | C*02:02        | lg     | C*02:02ARS     |
-      | C*02:10        | lg     | C*02:02ARS     |
+      | A*01:01:01     | lg    | A*01:01ARS     |
+      | HLA-A*01:01:01 | lg    | HLA-A*01:01ARS |
+      | DRB1*14:06:01  | lg    | DRB1*14:06ARS  |
+      | C*02:02        | lg    | C*02:02ARS     |
+      | C*02:10        | lg    | C*02:02ARS     |