1.0.1 → Bug Fixes for 1.0.0 Release

Fixed bugs and added some niceties

#237 Additional functionalities for pyard CLI command enhancement
#235 Invalid allele in CWD2 mapping bug
#234 Success with lgx when given Invalid format bug
#233 validate endpoint can be a GET request enhancement
#230 Redux with a "P" option does not return P-groups for two-field or three-field alleles bug

Final Release 1.0.0

Release YAY!! 🎉

Fix PyPi Packaging

Include requirements.txt files

Batch Reduce Fixes

Bug fixes

• Fix issue when adding locus name to a serology value
• Fix issue when reducing an allele-list
• Account for lower case allele names

Decode MAC and CWD 2.0 Reductions

Support looking up MAC code from allele list with lookup_mac method.

Support CWD Reduction:

• add cwd_redux method to produce CWD only allele list
• create cwd2 table on load
• cwd-redux endpoint to allow CWD reduction

Fix Pandas dependencies Latest

Set to pandas==1.5.3

Documentation Update and Cleanup

What's Changed

• Documentation and cleanup for 1.0 by @pbashyal-nmdp in #219

Full Changelog: 1.0.0rc3...1.0.0rc4

Performance Update

This PR gathers all the performance improvements. speed of pyard increased multiple fold. Faster startups.

Update for performance:

• aggressive caching for most used functions
• import pandas only during loading of data
• query for column
• remove use of regex for simple checks
• option to choose cache in batch

Refactor/cleanup:

• make methods private that do not need to be exposed
• wrap with try/catch all calls to load data

2nd Release Candidate for 1.0

Supports reduction type of P for P-group reduction.

Release Candidate for 1.0

• A single redux does allele and GL String reductions.
• Added API to show broad/splits
• Batchmode allows GL String output
• Set $TEMPDIR/pyard/ as the default path for storing db files.
• Use pyard-reduce-csv --generate-sample to get sample config/input file
• Lots of improvements/features in the CLI tools
• Refactoring of code