Merge pull request #31 from pbashyal-nmdp/make_graph_module

mmaiers-nmdp · web-flow · commit 55b36f130085 · 2024-01-04T11:35:34.000-06:00
Check for empty lines in HPF
diff --git a/README.md b/README.md
@@ -93,7 +93,7 @@ This will produce the following files:
 #### Produce Imputation Results for Subjects
 
 ```
->>> from grim.grim import graph_freqs, impute
+>>> from grim.grim import impute
 >>> impute(conf_file='conf/minimal-configuration.json')
 ****************************************************************************************************
 Performing imputation based on:
diff --git a/conf/minimal-configuration-script.json b/conf/minimal-configuration-script.json
diff --git a/graph_generation/generate_neo4j_multi_hpf.py b/graph_generation/generate_neo4j_multi_hpf.py
@@ -318,6 +318,8 @@ def generate_graph(
     num_of_alleles = len(FULL_LOCI)
     with open(freq_file) as f:
         for hap_line in f:
+            if not hap_line:
+                continue
             haplotype, pop, freq = hap_line.split(",")
             if haplotype == "hap":
                 continue
