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new working version of new dir structure
1 parent d02f0bb commit b6cd359

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.gitignore

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@@ -116,6 +116,7 @@ venv.bak/
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.spyproject
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.idea
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.vscode
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*.swp
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# Rope project settings
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.ropeproject
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# cython temp files
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grim/**/*.c
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output/

Makefile

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@@ -90,6 +90,7 @@ docker: docker-build ## build a docker image and run the service
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install: clean ## install the package to the active Python's site-packages
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pip install --upgrade pip
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python3 setup.py build_ext --inplace
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python setup.py install
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pip install -r requirements.txt
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pip install -r requirements-tests.txt

conf/bart/5loci-configuration.json

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conf/bart/9loci-configuration.json

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conf/haplogic/5loci-don-configuration.json

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conf/haplogic/5loci-pat-configuration.json

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conf/haplogic/6loci-don-configuration.json

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