fix example in cleanup_by_species; add cran mirror in some vignettes

Author: e-perl-NOAA

R/cleanup_by_species.R

@@ -20,7 +20,7 @@
 #'
 #' @examples
 #' catch <- surveyresamplr::noaa_nwfsc_catch
-#' spp_list <- data.frame(
+#' spp_info <- data.frame(
 #'   srvy = "CA",
 #'   common_name = "arrowtooth flounder",
 #'   file_name = "arrowtooth_flounder",

vignettes/afsc-bs.Rmd

@@ -15,6 +15,9 @@ knitr::opts_chunk$set(
 ```
 
 ```{r setup}
+# set CRAN mirror
+options(repos = c(CRAN = "https://cran.rstudio.com"))
+
 # Get rid of memory limits -----------------------------------------------------
 options(future.globals.maxSize = 1 * 1024^4) # Allow up to 1 TB for globals
 

vignettes/afsc-ebs.Rmd

@@ -15,6 +15,9 @@ knitr::opts_chunk$set(
 ```
 
 ```{r setup}
+# set CRAN mirror
+options(repos = c(CRAN = "https://cran.rstudio.com"))
+
 # Get rid of memory limits -----------------------------------------------------
 options(future.globals.maxSize = 1 * 1024^4) # Allow up to 1 TB for globals