diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index b2aa857..951e03e 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -23,10 +23,10 @@ jobs: file: Dockerfile load: true - name: Run ruff check - run: docker run --rm ${{ steps.build.outputs.imageid }} poetry run ruff check + run: docker run --rm ${{ steps.build.outputs.imageid }} ruff check - name: Run format check - run: docker run --rm ${{ steps.build.outputs.imageid }} poetry run ruff format --check + run: docker run --rm ${{ steps.build.outputs.imageid }} ruff format --check - name: Run mypy - run: docker run --rm ${{ steps.build.outputs.imageid }} poetry run mypy . + run: docker run --rm ${{ steps.build.outputs.imageid }} mypy . - name: Run tests - run: docker run --rm -e GALAXY_URL=${{ env.GALAXY_URL }} -e GALAXY_API_KEY=${{ env.GALAXY_API_KEY }} ${{ steps.build.outputs.imageid }} poetry run pytest test_examples.py + run: docker run --rm -e GALAXY_URL=${{ env.GALAXY_URL }} -e GALAXY_API_KEY=${{ env.GALAXY_API_KEY }} ${{ steps.build.outputs.imageid }} pytest test_examples.py diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 302be76..b2e77ee 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -20,7 +20,7 @@ repos: hooks: - id: mypy name: mypy - entry: poetry run mypy . + entry: pixi run mypy . language: system types: [python] verbose: true diff --git a/Dockerfile b/Dockerfile index 1e52a32..236b5da 100644 --- a/Dockerfile +++ b/Dockerfile @@ -7,17 +7,17 @@ RUN apt update && apt install -y \ libx11-dev \ libxrender1 -ENV POETRY_HOME=/poetry -ENV PATH=/poetry/bin:$PATH -RUN curl -sSL https://install.python-poetry.org | python3 - +RUN curl -fsSL https://pixi.sh/install.sh | sh +ENV PATH="/root/.pixi/bin:${PATH}" RUN mkdir -p /opt/run/examples COPY examples/ /opt/run/examples/ COPY tests/ /opt/run/ COPY pyproject.toml /opt/run/pyproject.toml -COPY poetry.lock /opt/run/poetry.lock WORKDIR /opt/run -RUN poetry install +RUN pixi install +SHELL [ "pixi", "run" ] +ENTRYPOINT [ "pixi", "run" ] CMD [] diff --git a/README.md b/README.md index 55ea04f..2efa34e 100644 --- a/README.md +++ b/README.md @@ -27,11 +27,11 @@ We also provide examples that take advantage of ORNL resources: ## Running Examples -If you want to run the examples, then you will need to install [Poetry](https://python-poetry.org/). Once done, run the following to run an example. +If you want to run the examples, then you will need to install [Pixi](https://pixi.sh/latest/). Once done, run the following to run an example. ```bash -poetry install -poetry run python examples/{example_folder}/main.py +pixi install +pixi run python -m examples.{example_folder} ``` ## Running Tests @@ -39,8 +39,7 @@ poetry run python examples/{example_folder}/main.py This repo includes an automated test to ensure that each example runs: ```bash -poetry install -poetry run pytest +pixi run pytest ``` You can set the environment variable `INCLUDE_ORNL_TESTS=1` if you want to test the examples that rely on specific ORNL resources. Note that you will need to run them from a location that has access to these resources. diff --git a/examples/complex_pydantic_rules/__main__.py b/examples/complex_pydantic_rules/__main__.py new file mode 100644 index 0000000..cad6af7 --- /dev/null +++ b/examples/complex_pydantic_rules/__main__.py @@ -0,0 +1,5 @@ +"""Entrypoint.""" + +from .main import main + +main() diff --git a/examples/conditional_disabling/__main__.py b/examples/conditional_disabling/__main__.py new file mode 100644 index 0000000..cad6af7 --- /dev/null +++ b/examples/conditional_disabling/__main__.py @@ -0,0 +1,5 @@ +"""Entrypoint.""" + +from .main import main + +main() diff --git a/examples/conditional_rendering/__main__.py b/examples/conditional_rendering/__main__.py new file mode 100644 index 0000000..cad6af7 --- /dev/null +++ b/examples/conditional_rendering/__main__.py @@ -0,0 +1,5 @@ +"""Entrypoint.""" + +from .main import main + +main() diff --git a/examples/data_selector/__main__.py b/examples/data_selector/__main__.py new file mode 100644 index 0000000..cad6af7 --- /dev/null +++ b/examples/data_selector/__main__.py @@ -0,0 +1,5 @@ +"""Entrypoint.""" + +from .main import main + +main() diff --git a/examples/dialog/__main__.py b/examples/dialog/__main__.py new file mode 100644 index 0000000..cad6af7 --- /dev/null +++ b/examples/dialog/__main__.py @@ -0,0 +1,5 @@ +"""Entrypoint.""" + +from .main import main + +main() diff --git a/examples/dynamic_pydantic_rules/__main__.py b/examples/dynamic_pydantic_rules/__main__.py new file mode 100644 index 0000000..cad6af7 --- /dev/null +++ b/examples/dynamic_pydantic_rules/__main__.py @@ -0,0 +1,5 @@ +"""Entrypoint.""" + +from .main import main + +main() diff --git a/examples/matplotlib/__main__.py b/examples/matplotlib/__main__.py new file mode 100644 index 0000000..cad6af7 --- /dev/null +++ b/examples/matplotlib/__main__.py @@ -0,0 +1,5 @@ +"""Entrypoint.""" + +from .main import main + +main() diff --git a/examples/multitab/__main__.py b/examples/multitab/__main__.py new file mode 100644 index 0000000..cad6af7 --- /dev/null +++ b/examples/multitab/__main__.py @@ -0,0 +1,5 @@ +"""Entrypoint.""" + +from .main import main + +main() diff --git a/examples/ornl/neutron_data_selector/__main__.py b/examples/ornl/neutron_data_selector/__main__.py new file mode 100644 index 0000000..cad6af7 --- /dev/null +++ b/examples/ornl/neutron_data_selector/__main__.py @@ -0,0 +1,5 @@ +"""Entrypoint.""" + +from .main import main + +main() diff --git a/examples/ornl/oncat/__main__.py b/examples/ornl/oncat/__main__.py new file mode 100644 index 0000000..cad6af7 --- /dev/null +++ b/examples/ornl/oncat/__main__.py @@ -0,0 +1,5 @@ +"""Entrypoint.""" + +from .main import main + +main() diff --git a/examples/plotly/__main__.py b/examples/plotly/__main__.py new file mode 100644 index 0000000..cad6af7 --- /dev/null +++ b/examples/plotly/__main__.py @@ -0,0 +1,5 @@ +"""Entrypoint.""" + +from .main import main + +main() diff --git a/examples/pydantic_form/__main__.py b/examples/pydantic_form/__main__.py new file mode 100644 index 0000000..cad6af7 --- /dev/null +++ b/examples/pydantic_form/__main__.py @@ -0,0 +1,5 @@ +"""Entrypoint.""" + +from .main import main + +main() diff --git a/examples/pydantic_form_with_options/__main__.py b/examples/pydantic_form_with_options/__main__.py new file mode 100644 index 0000000..cad6af7 --- /dev/null +++ b/examples/pydantic_form_with_options/__main__.py @@ -0,0 +1,5 @@ +"""Entrypoint.""" + +from .main import main + +main() diff --git a/examples/pydantic_monaco/__main__.py b/examples/pydantic_monaco/__main__.py new file mode 100644 index 0000000..cad6af7 --- /dev/null +++ b/examples/pydantic_monaco/__main__.py @@ -0,0 +1,5 @@ +"""Entrypoint.""" + +from .main import main + +main() diff --git a/examples/run_galaxy_tool/__main__.py b/examples/run_galaxy_tool/__main__.py new file mode 100644 index 0000000..cad6af7 --- /dev/null +++ b/examples/run_galaxy_tool/__main__.py @@ -0,0 +1,5 @@ +"""Entrypoint.""" + +from .main import main + +main() diff --git a/examples/run_galaxy_workflow/__main__.py b/examples/run_galaxy_workflow/__main__.py new file mode 100644 index 0000000..cad6af7 --- /dev/null +++ b/examples/run_galaxy_workflow/__main__.py @@ -0,0 +1,5 @@ +"""Entrypoint.""" + +from .main import main + +main() diff --git a/examples/vtk/__main__.py b/examples/vtk/__main__.py new file mode 100644 index 0000000..cad6af7 --- /dev/null +++ b/examples/vtk/__main__.py @@ -0,0 +1,5 @@ +"""Entrypoint.""" + +from .main import main + +main() diff --git a/pixi.lock b/pixi.lock new file mode 100644 index 0000000..cd3947e --- /dev/null +++ b/pixi.lock @@ -0,0 +1,2022 @@ +version: 6 +environments: + default: + channels: + - 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