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{file = "yarl-1.18.3.tar.gz", hash = "sha256:ac1801c45cbf77b6c99242eeff4fffb5e4e73a800b5c4ad4fc0be5def634d2e1"}, -] - -[package.dependencies] -idna = ">=2.0" -multidict = ">=4.0" -propcache = ">=0.2.0" - -[metadata] -lock-version = "2.0" -python-versions = "^3.10" -content-hash = "1131a1a151f36bbe11b4fc723d87b3b6ff1d523b617c477bea8ff7b11b8c9997" diff --git a/code/episode_2/pyproject.toml b/code/episode_2/pyproject.toml index acfaf7b1..5f0d2bf9 100755 --- a/code/episode_2/pyproject.toml +++ b/code/episode_2/pyproject.toml @@ -1,4 +1,4 @@ -[tool.poetry] +[project] name = "nova-tutorial" version = "0.1.0" description = "Nova Tutorial Project" @@ -6,19 +6,51 @@ authors = [] readme = "README.md" license = "MIT" keywords = ["NDIP", "NOVA", "python"] +requires-python = ">=3.10,<3.14" -packages = [ - { include = "nova_tutorial", from = "src" } -] +[tool.pixi.workspace] +channels = ["conda-forge"] +platforms = ["linux-64", "osx-64"] + +[tool.pixi.environments] +default = {features = ["dev"], solve-group = "default"} +production = {features = [], solve-group = "default"} +[tool.pixi.dependencies] -[tool.poetry.dependencies] -python = "^3.10" +[tool.pixi.pypi-dependencies] +nova-tutorial = { path = ".", editable = true } +hatch = "*" +gitpython = ">=3.1.40,<4" +python-gitlab = ">=5.6.0,<6" nova-trame = "*" +trame-datagrid = ">=0.2.2" + + +[tool.pixi.feature.dev.pypi-dependencies] +mypy = ">=1.10.0" +pre-commit = ">=2.20.0" +coverage = ">=6.4.3" +pytest = "*" +ruff = ">=0.6.2" +copier=">=9.3" +sphinx = "*" +sphinx-rtd-theme = "*" +sphinxcontrib-napoleon ="*" +tomli = "*" + +[tool.pixi.tasks] +app = "python -m src.nova_tutorial.app" +init-repo = "python -m scripts.git_utils" +deploy-production = "python -m scripts.xml_utils" +deploy-prototype = "python -m scripts.xml_utils_prototype" + [build-system] -requires = ["poetry-core"] -build-backend = "poetry.core.masonry.api" +requires = ["hatchling"] +build-backend = "hatchling.build" +[tool.hatch.build.targets.wheel] +packages = ["src/nova_tutorial"] [tool.pytest.ini_options] testpaths = ["tests"] @@ -26,6 +58,7 @@ python_files = ["test*.py"] norecursedirs = [".git", "tmp*", "_tmp*", "__pycache__"] [tool.ruff] +extend-exclude = [".pixi"] line-length = 120 [tool.ruff.lint] @@ -50,8 +83,6 @@ ignore = [ [tool.ruff.lint.extend-per-file-ignores] '__init__.py' = ['D104'] # Missing docstring in public package - - [tool.ruff.lint.pydocstyle] convention = "numpy" @@ -72,18 +103,3 @@ omit = [ [tool.coverage.run] command_line = "-m pytest --junit-xml=reports/junit.xml" data_file = "reports/.coverage" - -[tool.poetry.dev-dependencies] -mypy = ">=1.10.0" -pre-commit = ">=2.20.0" -coverage = ">=6.4.3" -pytest = "*" -ruff = ">=0.6.2" -copier=">=9.3" -sphinx = "*" -sphinx-rtd-theme = "*" -sphinxcontrib-napoleon ="*" -tomli = "*" - -[tool.poetry.scripts] -app = "nova_tutorial.app:main" diff --git a/code/episode_2/src/nova_tutorial/__init__.py b/code/episode_2/src/nova_tutorial/__init__.py old mode 100755 new mode 100644 diff --git a/code/episode_2/src/nova_tutorial/app/__init__.py b/code/episode_2/src/nova_tutorial/app/__init__.py old mode 100755 new mode 100644 diff --git a/code/episode_2/src/nova_tutorial/app/__main__.py b/code/episode_2/src/nova_tutorial/app/__main__.py old mode 100755 new mode 100644 diff --git a/code/episode_2/src/nova_tutorial/app/main.py b/code/episode_2/src/nova_tutorial/app/main.py old mode 100755 new mode 100644 index 2977dbe1..68cf8a37 --- a/code/episode_2/src/nova_tutorial/app/main.py +++ b/code/episode_2/src/nova_tutorial/app/main.py @@ -5,7 +5,7 @@ def main() -> None: kwargs = {} - from .views.main import MainApp + from .views.main_view import MainApp app = MainApp() for arg in sys.argv[2:]: diff --git a/code/episode_2/src/nova_tutorial/app/models/__init__.py b/code/episode_2/src/nova_tutorial/app/models/__init__.py old mode 100755 new mode 100644 diff --git a/code/episode_2/src/nova_tutorial/app/models/main_model.py b/code/episode_2/src/nova_tutorial/app/models/main_model.py old mode 100755 new mode 100644 diff --git a/code/episode_2/src/nova_tutorial/app/mvvm_factory.py b/code/episode_2/src/nova_tutorial/app/mvvm_factory.py old mode 100755 new mode 100644 index d7cf5f4b..c11e5916 --- a/code/episode_2/src/nova_tutorial/app/mvvm_factory.py +++ b/code/episode_2/src/nova_tutorial/app/mvvm_factory.py @@ -3,7 +3,7 @@ from nova.mvvm.interface import BindingInterface from .models.main_model import MainModel -from .view_models.main import MainViewModel +from .view_models.main_view_model import MainViewModel def create_viewmodels(binding: BindingInterface) -> dict: diff --git a/code/episode_2/src/nova_tutorial/app/view_models/__init__.py b/code/episode_2/src/nova_tutorial/app/view_models/__init__.py old mode 100755 new mode 100644 diff --git a/code/episode_2/src/nova_tutorial/app/view_models/main.py b/code/episode_2/src/nova_tutorial/app/view_models/main.py deleted file mode 100755 index 5afc3cd0..00000000 --- a/code/episode_2/src/nova_tutorial/app/view_models/main.py +++ /dev/null @@ -1,30 +0,0 @@ -"""Module for the main ViewModel.""" - -from typing import Any, Dict - -from nova.mvvm.interface import BindingInterface - -from ..models.main_model import MainModel - - -class MainViewModel: - """Viewmodel class, used to create data<->view binding and react on changes from GUI.""" - - def __init__(self, model: MainModel, binding: BindingInterface): - self.model = model - - # here we create a bind that connects ViewModel with View. It returns a communicator object, - # that allows to update View from ViewModel (by calling update_view). - # self.model will be updated automatically on changes of connected fields in View, - # but one also can provide a callback function if they want to react to those events - # and/or process errors. - self.config_bind = binding.new_bind(self.model, callback_after_update=self.change_callback) - - def change_callback(self, results: Dict[str, Any]) -> None: - if results["error"]: - print(f"error in fields {results['errored']}, model not changed") - else: - print(f"model fields updated: {results['updated']}") - - def update_view(self) -> None: - self.config_bind.update_in_view(self.model) diff --git a/code/episode_2/src/nova_tutorial/app/views/__init__.py b/code/episode_2/src/nova_tutorial/app/views/__init__.py old mode 100755 new mode 100644 diff --git a/code/episode_2/src/nova_tutorial/app/views/main.py b/code/episode_2/src/nova_tutorial/app/views/main.py deleted file mode 100755 index c6832686..00000000 --- a/code/episode_2/src/nova_tutorial/app/views/main.py +++ /dev/null @@ -1,44 +0,0 @@ -"""Main file.""" - -import logging - -from nova.mvvm.trame_binding import TrameBinding -from nova.trame import ThemedApp -from trame.app import get_server - -from ..mvvm_factory import create_viewmodels -from ..view_models.main import MainViewModel -from .tab_content_panel import TabContentPanel -from .tabs_panel import TabsPanel - -logger = logging.getLogger(__name__) -logger.setLevel(logging.INFO) - - -class MainApp(ThemedApp): - """Main application view class. Calls rendering of nested UI elements.""" - - def __init__(self) -> None: - super().__init__() - self.server = get_server(None, client_type="vue3") - binding = TrameBinding(self.server.state) - self.server.state.trame__title = "Nova Tutorial" - self.view_models = create_viewmodels(binding) - self.view_model: MainViewModel = self.view_models["main"] - self.create_ui() - - def create_ui(self) -> None: - self.state.trame__title = "Nova Tutorial" - - with super().create_ui() as layout: - layout.toolbar_title.set_text("Nova Tutorial") - with layout.pre_content: - TabsPanel(self.view_models["main"]) - with layout.content: - TabContentPanel( - self.server, - self.view_models["main"], - ) - with layout.post_content: - pass - return layout diff --git a/code/episode_2/src/nova_tutorial/app/views/sample_tab_1.py b/code/episode_2/src/nova_tutorial/app/views/sample_tab_1.py old mode 100755 new mode 100644 index 891cdd10..f5d062e5 --- a/code/episode_2/src/nova_tutorial/app/views/sample_tab_1.py +++ b/code/episode_2/src/nova_tutorial/app/views/sample_tab_1.py @@ -1,6 +1,7 @@ """Module for the Sample Tab 1.""" from nova.trame.view.components import InputField +from nova.trame.view.layouts import VBoxLayout class SampleTab1: @@ -10,4 +11,5 @@ def __init__(self) -> None: self.create_ui() def create_ui(self) -> None: - InputField(v_model="config.username") + with VBoxLayout(): + InputField(v_model="config.username") diff --git a/code/episode_2/src/nova_tutorial/app/views/sample_tab_2.py b/code/episode_2/src/nova_tutorial/app/views/sample_tab_2.py old mode 100755 new mode 100644 index 46765f0a..0e787b40 --- a/code/episode_2/src/nova_tutorial/app/views/sample_tab_2.py +++ b/code/episode_2/src/nova_tutorial/app/views/sample_tab_2.py @@ -1,6 +1,7 @@ """Module for the Sample Tab 2.""" from nova.trame.view.components import InputField +from nova.trame.view.layouts import VBoxLayout class SampleTab2: @@ -10,4 +11,5 @@ def __init__(self) -> None: self.create_ui() def create_ui(self) -> None: - InputField(v_model="config.password") + with VBoxLayout(): + InputField(v_model="config.password") diff --git a/code/episode_2/src/nova_tutorial/app/views/tab_content_panel.py b/code/episode_2/src/nova_tutorial/app/views/tab_content_panel.py old mode 100755 new mode 100644 index 2f813811..4b61ee4c --- a/code/episode_2/src/nova_tutorial/app/views/tab_content_panel.py +++ b/code/episode_2/src/nova_tutorial/app/views/tab_content_panel.py @@ -1,9 +1,9 @@ """Module for the Tab Content panel.""" -from trame.widgets import vuetify3 as vuetify +from nova.trame.view.layouts import VBoxLayout from trame_server import Server -from ..view_models.main import MainViewModel +from ..view_models.main_view_model import MainViewModel from .sample_tab_1 import SampleTab1 from .sample_tab_2 import SampleTab2 @@ -18,11 +18,7 @@ def __init__(self, server: Server, view_model: MainViewModel) -> None: self.create_ui() def create_ui(self) -> None: - with vuetify.VForm(ref="form") as self.f: - with vuetify.VContainer(classes="pa-0", fluid=True): - with vuetify.VCard(): - with vuetify.VWindow(v_model="active_tab"): - with vuetify.VWindowItem(value=1): - SampleTab1() - with vuetify.VWindowItem(value=2): - SampleTab2() + with VBoxLayout(v_show="view_state.active_tab == 0", stretch=True): + SampleTab1() + with VBoxLayout(v_show="view_state.active_tab == 1", stretch=True): + SampleTab2() diff --git a/code/episode_2/src/nova_tutorial/app/views/tabs_panel.py b/code/episode_2/src/nova_tutorial/app/views/tabs_panel.py old mode 100755 new mode 100644 index c36ea880..478b9c28 --- a/code/episode_2/src/nova_tutorial/app/views/tabs_panel.py +++ b/code/episode_2/src/nova_tutorial/app/views/tabs_panel.py @@ -1,8 +1,9 @@ """Module for the Tab panel.""" +from trame.widgets import client from trame.widgets import vuetify3 as vuetify -from ..view_models.main import MainViewModel +from ..view_models.main_view_model import MainViewModel class TabsPanel: @@ -11,9 +12,11 @@ class TabsPanel: def __init__(self, view_model: MainViewModel): self.view_model = view_model self.view_model.config_bind.connect("config") + self.view_model.view_state_bind.connect("view_state") self.create_ui() def create_ui(self) -> None: - with vuetify.VTabs(v_model=("active_tab", 0), classes="pl-5"): - vuetify.VTab("Sample Tab 1", value=1) - vuetify.VTab("Sample Tab 2", value=2) + with client.DeepReactive("view_state"): + with vuetify.VTabs(v_model="view_state.active_tab", classes="pl-5"): + vuetify.VTab("Sample Tab 1", value=0) + vuetify.VTab("Sample Tab 2", value=1) diff --git a/code/episode_3/poetry.lock b/code/episode_3/poetry.lock deleted file mode 100644 index 4e9d65c3..00000000 --- a/code/episode_3/poetry.lock +++ /dev/null @@ -1,2335 +0,0 @@ -# This file is automatically @generated by Poetry 1.4.1 and should not be changed by hand. - -[[package]] -name = "aiohappyeyeballs" -version = "2.4.4" -description = "Happy Eyeballs for asyncio" -category = "main" -optional = false -python-versions = ">=3.8" -files = [ - {file = "aiohappyeyeballs-2.4.4-py3-none-any.whl", hash = "sha256:a980909d50efcd44795c4afeca523296716d50cd756ddca6af8c65b996e27de8"}, - {file = "aiohappyeyeballs-2.4.4.tar.gz", hash = "sha256:5fdd7d87889c63183afc18ce9271f9b0a7d32c2303e394468dd45d514a757745"}, -] - 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{file = "yarl-1.18.3.tar.gz", hash = "sha256:ac1801c45cbf77b6c99242eeff4fffb5e4e73a800b5c4ad4fc0be5def634d2e1"}, -] - -[package.dependencies] -idna = ">=2.0" -multidict = ">=4.0" -propcache = ">=0.2.0" - -[metadata] -lock-version = "2.0" -python-versions = "^3.10" -content-hash = "21cb4efdfeedffeac02c47e0e53c8fa5e296badf0f246a4f72738eb878ebcc21" diff --git a/code/episode_3/pyproject.toml b/code/episode_3/pyproject.toml index 1237ea40..42637af1 100755 --- a/code/episode_3/pyproject.toml +++ b/code/episode_3/pyproject.toml @@ -1,4 +1,4 @@ -[tool.poetry] +[project] name = "nova-tutorial" version = "0.1.0" description = "Nova Tutorial Project" @@ -6,21 +6,52 @@ authors = [] readme = "README.md" license = "MIT" keywords = ["NDIP", "NOVA", "python"] +requires-python = ">=3.10,<3.14" +dependencies = ["nova-galaxy>=0.11.6,<0.12"] -packages = [ - { include = "nova_tutorial", from = "src" } -] +[tool.pixi.workspace] +channels = ["conda-forge"] +platforms = ["linux-64", "osx-64"] + +[tool.pixi.environments] +default = {features = ["dev"], solve-group = "default"} +production = {features = [], solve-group = "default"} +[tool.pixi.dependencies] -[tool.poetry.dependencies] -python = "^3.10" +[tool.pixi.pypi-dependencies] +nova-tutorial = { path = ".", editable = true } +hatch = "*" +gitpython = ">=3.1.40,<4" +python-gitlab = ">=5.6.0,<6" nova-trame = "*" -nova-galaxy = "^0.7.0" +trame-datagrid = ">=0.2.2" + + +[tool.pixi.feature.dev.pypi-dependencies] +mypy = ">=1.10.0" +pre-commit = ">=2.20.0" +coverage = ">=6.4.3" +pytest = "*" +ruff = ">=0.6.2" +copier=">=9.3" +sphinx = "*" +sphinx-rtd-theme = "*" +sphinxcontrib-napoleon ="*" +tomli = "*" + +[tool.pixi.tasks] +app = "python -m src.nova_tutorial.app" +init-repo = "python -m scripts.git_utils" +deploy-production = "python -m scripts.xml_utils" +deploy-prototype = "python -m scripts.xml_utils_prototype" [build-system] -requires = ["poetry-core"] -build-backend = "poetry.core.masonry.api" +requires = ["hatchling"] +build-backend = "hatchling.build" +[tool.hatch.build.targets.wheel] +packages = ["src/nova_tutorial"] [tool.pytest.ini_options] testpaths = ["tests"] @@ -28,6 +59,7 @@ python_files = ["test*.py"] norecursedirs = [".git", "tmp*", "_tmp*", "__pycache__"] [tool.ruff] +extend-exclude = [".pixi"] line-length = 120 [tool.ruff.lint] @@ -52,8 +84,6 @@ ignore = [ [tool.ruff.lint.extend-per-file-ignores] '__init__.py' = ['D104'] # Missing docstring in public package - - [tool.ruff.lint.pydocstyle] convention = "numpy" @@ -72,20 +102,4 @@ omit = [ ] [tool.coverage.run] -command_line = "-m pytest --junit-xml=reports/junit.xml" -data_file = "reports/.coverage" - -[tool.poetry.dev-dependencies] -mypy = ">=1.10.0" -pre-commit = ">=2.20.0" -coverage = ">=6.4.3" -pytest = "*" -ruff = ">=0.6.2" -copier=">=9.3" -sphinx = "*" -sphinx-rtd-theme = "*" -sphinxcontrib-napoleon ="*" -tomli = "*" - -[tool.poetry.scripts] -app = "nova_tutorial.app:main" +command_line = "-m pytest --jun \ No newline at end of file diff --git a/code/episode_3/src/nova_tutorial/__init__.py b/code/episode_3/src/nova_tutorial/__init__.py old mode 100755 new mode 100644 diff --git a/code/episode_3/src/nova_tutorial/app/__init__.py b/code/episode_3/src/nova_tutorial/app/__init__.py old mode 100755 new mode 100644 diff --git a/code/episode_3/src/nova_tutorial/app/__main__.py b/code/episode_3/src/nova_tutorial/app/__main__.py old mode 100755 new mode 100644 diff --git a/code/episode_3/src/nova_tutorial/app/main.py b/code/episode_3/src/nova_tutorial/app/main.py old mode 100755 new mode 100644 index d77c9da4..9d7983ba --- a/code/episode_3/src/nova_tutorial/app/main.py +++ b/code/episode_3/src/nova_tutorial/app/main.py @@ -11,15 +11,14 @@ def main() -> None: except Exception as e: print(f"Error running fractal tool: {e}") + # kwargs = {} + # from .views.main_view import MainApp - kwargs = {} - from .views.main import MainApp - - app = MainApp() - for arg in sys.argv[2:]: - try: - key, value = arg.split("=") - kwargs[key] = int(value) - except Exception: - pass - app.server.start(**kwargs) + # app = MainApp() + # for arg in sys.argv[2:]: + # try: + # key, value = arg.split("=") + # kwargs[key] = int(value) + # except Exception: + # pass + # app.server.start(**kwargs) diff --git a/code/episode_3/src/nova_tutorial/app/models/__init__.py b/code/episode_3/src/nova_tutorial/app/models/__init__.py old mode 100755 new mode 100644 diff --git a/code/episode_3/src/nova_tutorial/app/models/fractal.py b/code/episode_3/src/nova_tutorial/app/models/fractal.py old mode 100755 new mode 100644 index 6d8148e3..fa067c52 --- a/code/episode_3/src/nova_tutorial/app/models/fractal.py +++ b/code/episode_3/src/nova_tutorial/app/models/fractal.py @@ -8,16 +8,7 @@ def __init__(self): self.galaxy_url = os.getenv("GALAXY_URL") self.galaxy_key = os.getenv("GALAXY_API_KEY") - def set_fractal_type(self, fractal_type: str): - self.fractal_type = fractal_type - def run_fractal_tool(self): - """Runs the fractal tool with the current fractal type.""" - if not self.galaxy_url or not self.galaxy_key: - raise Exception( - "You must specify GALAXY_URL and GALAXY_API_KEY as environment variables." - ) - conn = Connection(galaxy_url=self.galaxy_url, galaxy_key=self.galaxy_key) tool = Tool(id="neutrons_fractal") params = Parameters() @@ -27,7 +18,6 @@ def run_fractal_tool(self): data_store = galaxy_connection.create_data_store(name="fractal_store") data_store.persist() print("Executing fractal tool. This might take a few minutes.") - output = tool.run(data_store, params) + output = tool.run(data_store, params, wait=True) output.get_dataset("output").download("image.png") - - print("Fractal tool finished successfully.") \ No newline at end of file + print("Fractal tool finished successfully.") diff --git a/code/episode_3/src/nova_tutorial/app/models/main_model.py b/code/episode_3/src/nova_tutorial/app/models/main_model.py old mode 100755 new mode 100644 diff --git a/code/episode_3/src/nova_tutorial/app/mvvm_factory.py b/code/episode_3/src/nova_tutorial/app/mvvm_factory.py old mode 100755 new mode 100644 index d7cf5f4b..c11e5916 --- a/code/episode_3/src/nova_tutorial/app/mvvm_factory.py +++ b/code/episode_3/src/nova_tutorial/app/mvvm_factory.py @@ -3,7 +3,7 @@ from nova.mvvm.interface import BindingInterface from .models.main_model import MainModel -from .view_models.main import MainViewModel +from .view_models.main_view_model import MainViewModel def create_viewmodels(binding: BindingInterface) -> dict: diff --git a/code/episode_3/src/nova_tutorial/app/view_models/__init__.py b/code/episode_3/src/nova_tutorial/app/view_models/__init__.py old mode 100755 new mode 100644 diff --git a/code/episode_3/src/nova_tutorial/app/view_models/main.py b/code/episode_3/src/nova_tutorial/app/view_models/main.py deleted file mode 100755 index 5afc3cd0..00000000 --- a/code/episode_3/src/nova_tutorial/app/view_models/main.py +++ /dev/null @@ -1,30 +0,0 @@ -"""Module for the main ViewModel.""" - -from typing import Any, Dict - -from nova.mvvm.interface import BindingInterface - -from ..models.main_model import MainModel - - -class MainViewModel: - """Viewmodel class, used to create data<->view binding and react on changes from GUI.""" - - def __init__(self, model: MainModel, binding: BindingInterface): - self.model = model - - # here we create a bind that connects ViewModel with View. It returns a communicator object, - # that allows to update View from ViewModel (by calling update_view). - # self.model will be updated automatically on changes of connected fields in View, - # but one also can provide a callback function if they want to react to those events - # and/or process errors. - self.config_bind = binding.new_bind(self.model, callback_after_update=self.change_callback) - - def change_callback(self, results: Dict[str, Any]) -> None: - if results["error"]: - print(f"error in fields {results['errored']}, model not changed") - else: - print(f"model fields updated: {results['updated']}") - - def update_view(self) -> None: - self.config_bind.update_in_view(self.model) diff --git a/code/episode_3/src/nova_tutorial/app/views/__init__.py b/code/episode_3/src/nova_tutorial/app/views/__init__.py old mode 100755 new mode 100644 diff --git a/code/episode_3/src/nova_tutorial/app/views/main.py b/code/episode_3/src/nova_tutorial/app/views/main.py deleted file mode 100755 index c6832686..00000000 --- a/code/episode_3/src/nova_tutorial/app/views/main.py +++ /dev/null @@ -1,44 +0,0 @@ -"""Main file.""" - -import logging - -from nova.mvvm.trame_binding import TrameBinding -from nova.trame import ThemedApp -from trame.app import get_server - -from ..mvvm_factory import create_viewmodels -from ..view_models.main import MainViewModel -from .tab_content_panel import TabContentPanel -from .tabs_panel import TabsPanel - -logger = logging.getLogger(__name__) -logger.setLevel(logging.INFO) - - -class MainApp(ThemedApp): - """Main application view class. Calls rendering of nested UI elements.""" - - def __init__(self) -> None: - super().__init__() - self.server = get_server(None, client_type="vue3") - binding = TrameBinding(self.server.state) - self.server.state.trame__title = "Nova Tutorial" - self.view_models = create_viewmodels(binding) - self.view_model: MainViewModel = self.view_models["main"] - self.create_ui() - - def create_ui(self) -> None: - self.state.trame__title = "Nova Tutorial" - - with super().create_ui() as layout: - layout.toolbar_title.set_text("Nova Tutorial") - with layout.pre_content: - TabsPanel(self.view_models["main"]) - with layout.content: - TabContentPanel( - self.server, - self.view_models["main"], - ) - with layout.post_content: - pass - return layout diff --git a/code/episode_3/src/nova_tutorial/app/views/sample_tab_1.py b/code/episode_3/src/nova_tutorial/app/views/sample_tab_1.py old mode 100755 new mode 100644 index 891cdd10..f5d062e5 --- a/code/episode_3/src/nova_tutorial/app/views/sample_tab_1.py +++ b/code/episode_3/src/nova_tutorial/app/views/sample_tab_1.py @@ -1,6 +1,7 @@ """Module for the Sample Tab 1.""" from nova.trame.view.components import InputField +from nova.trame.view.layouts import VBoxLayout class SampleTab1: @@ -10,4 +11,5 @@ def __init__(self) -> None: self.create_ui() def create_ui(self) -> None: - InputField(v_model="config.username") + with VBoxLayout(): + InputField(v_model="config.username") diff --git a/code/episode_3/src/nova_tutorial/app/views/sample_tab_2.py b/code/episode_3/src/nova_tutorial/app/views/sample_tab_2.py old mode 100755 new mode 100644 index 46765f0a..0e787b40 --- a/code/episode_3/src/nova_tutorial/app/views/sample_tab_2.py +++ b/code/episode_3/src/nova_tutorial/app/views/sample_tab_2.py @@ -1,6 +1,7 @@ """Module for the Sample Tab 2.""" from nova.trame.view.components import InputField +from nova.trame.view.layouts import VBoxLayout class SampleTab2: @@ -10,4 +11,5 @@ def __init__(self) -> None: self.create_ui() def create_ui(self) -> None: - InputField(v_model="config.password") + with VBoxLayout(): + InputField(v_model="config.password") diff --git a/code/episode_3/src/nova_tutorial/app/views/tab_content_panel.py b/code/episode_3/src/nova_tutorial/app/views/tab_content_panel.py old mode 100755 new mode 100644 index 2f813811..4b61ee4c --- a/code/episode_3/src/nova_tutorial/app/views/tab_content_panel.py +++ b/code/episode_3/src/nova_tutorial/app/views/tab_content_panel.py @@ -1,9 +1,9 @@ """Module for the Tab Content panel.""" -from trame.widgets import vuetify3 as vuetify +from nova.trame.view.layouts import VBoxLayout from trame_server import Server -from ..view_models.main import MainViewModel +from ..view_models.main_view_model import MainViewModel from .sample_tab_1 import SampleTab1 from .sample_tab_2 import SampleTab2 @@ -18,11 +18,7 @@ def __init__(self, server: Server, view_model: MainViewModel) -> None: self.create_ui() def create_ui(self) -> None: - with vuetify.VForm(ref="form") as self.f: - with vuetify.VContainer(classes="pa-0", fluid=True): - with vuetify.VCard(): - with vuetify.VWindow(v_model="active_tab"): - with vuetify.VWindowItem(value=1): - SampleTab1() - with vuetify.VWindowItem(value=2): - SampleTab2() + with VBoxLayout(v_show="view_state.active_tab == 0", stretch=True): + SampleTab1() + with VBoxLayout(v_show="view_state.active_tab == 1", stretch=True): + SampleTab2() diff --git a/code/episode_3/src/nova_tutorial/app/views/tabs_panel.py b/code/episode_3/src/nova_tutorial/app/views/tabs_panel.py old mode 100755 new mode 100644 index c36ea880..478b9c28 --- a/code/episode_3/src/nova_tutorial/app/views/tabs_panel.py +++ b/code/episode_3/src/nova_tutorial/app/views/tabs_panel.py @@ -1,8 +1,9 @@ """Module for the Tab panel.""" +from trame.widgets import client from trame.widgets import vuetify3 as vuetify -from ..view_models.main import MainViewModel +from ..view_models.main_view_model import MainViewModel class TabsPanel: @@ -11,9 +12,11 @@ class TabsPanel: def __init__(self, view_model: MainViewModel): self.view_model = view_model self.view_model.config_bind.connect("config") + self.view_model.view_state_bind.connect("view_state") self.create_ui() def create_ui(self) -> None: - with vuetify.VTabs(v_model=("active_tab", 0), classes="pl-5"): - vuetify.VTab("Sample Tab 1", value=1) - vuetify.VTab("Sample Tab 2", value=2) + with client.DeepReactive("view_state"): + with vuetify.VTabs(v_model="view_state.active_tab", classes="pl-5"): + vuetify.VTab("Sample Tab 1", value=0) + vuetify.VTab("Sample Tab 2", value=1) diff --git a/code/episode_4/poetry.lock b/code/episode_4/poetry.lock deleted file mode 100644 index c0a0b9ca..00000000 --- a/code/episode_4/poetry.lock +++ /dev/null @@ -1,2247 +0,0 @@ -# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. - -[[package]] -name = "aiohappyeyeballs" -version = "2.4.4" -description = "Happy Eyeballs for asyncio" -optional = false -python-versions = ">=3.8" -files = [ - {file = "aiohappyeyeballs-2.4.4-py3-none-any.whl", hash = "sha256:a980909d50efcd44795c4afeca523296716d50cd756ddca6af8c65b996e27de8"}, - {file = "aiohappyeyeballs-2.4.4.tar.gz", hash = "sha256:5fdd7d87889c63183afc18ce9271f9b0a7d32c2303e394468dd45d514a757745"}, -] - 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- [tool.ruff.lint.pydocstyle] convention = "numpy" @@ -72,20 +102,4 @@ omit = [ ] [tool.coverage.run] -command_line = "-m pytest --junit-xml=reports/junit.xml" -data_file = "reports/.coverage" - -[tool.poetry.dev-dependencies] -mypy = ">=1.10.0" -pre-commit = ">=2.20.0" -coverage = ">=6.4.3" -pytest = "*" -ruff = ">=0.6.2" -copier=">=9.3" -sphinx = "*" -sphinx-rtd-theme = "*" -sphinxcontrib-napoleon ="*" -tomli = "*" - -[tool.poetry.scripts] -app = "nova_tutorial.app:main" +command_line = "-m pytest --jun \ No newline at end of file diff --git a/code/episode_4/src/nova_tutorial/__init__.py b/code/episode_4/src/nova_tutorial/__init__.py old mode 100755 new mode 100644 diff --git a/code/episode_4/src/nova_tutorial/app/__init__.py b/code/episode_4/src/nova_tutorial/app/__init__.py old mode 100755 new mode 100644 diff --git a/code/episode_4/src/nova_tutorial/app/__main__.py b/code/episode_4/src/nova_tutorial/app/__main__.py old mode 100755 new mode 100644 diff --git a/code/episode_4/src/nova_tutorial/app/main.py b/code/episode_4/src/nova_tutorial/app/main.py old mode 100755 new mode 100644 index 2977dbe1..68cf8a37 --- a/code/episode_4/src/nova_tutorial/app/main.py +++ b/code/episode_4/src/nova_tutorial/app/main.py @@ -5,7 +5,7 @@ def main() -> None: kwargs = {} - from .views.main import MainApp + from .views.main_view import MainApp app = MainApp() for arg in sys.argv[2:]: diff --git a/code/episode_4/src/nova_tutorial/app/models/__init__.py b/code/episode_4/src/nova_tutorial/app/models/__init__.py old mode 100755 new mode 100644 diff --git a/code/episode_4/src/nova_tutorial/app/models/fractal.py b/code/episode_4/src/nova_tutorial/app/models/fractal.py old mode 100755 new mode 100644 index 841e72e5..8c0a1c50 --- a/code/episode_4/src/nova_tutorial/app/models/fractal.py +++ b/code/episode_4/src/nova_tutorial/app/models/fractal.py @@ -6,33 +6,33 @@ from nova.galaxy import Connection, Parameters, Tool -class Fractal(BaseModel): +class FractalData(BaseModel): fractal_type: Literal["mandelbrot", "julia", "random", "markus"] = Field(default="mandelbrot") - galaxy_url: str = Field(default_factory=lambda: os.getenv("GALAXY_URL"), description="NDIP Galaxy URL") - galaxy_key: str = Field(default_factory=lambda: os.getenv("GALAXY_API_KEY"), description="NDIP Galaxy API Key") + galaxy_url: str = Field(default=os.getenv("GALAXY_URL", ""), description="NDIP Galaxy URL") + galaxy_key: str = Field(default=os.getenv("GALAXY_API_KEY", ""), description="NDIP Galaxy API Key") image_data: str = Field(default="", description="Base64 encoded PNG") + +class Fractal: + def __init__(self): + self.data = FractalData(fractal_type="mandelbrot") + def set_fractal_type(self, fractal_type: str): - self.fractal_type = fractal_type + self.data.fractal_type = fractal_type def run_fractal_tool(self): - """Runs the fractal tool with the current fractal type.""" - if not self.galaxy_url or not self.galaxy_key: - raise Exception( - "You must specify GALAXY_URL and GALAXY_API_KEY as environment variables." - ) - - conn = Connection(galaxy_url=self.galaxy_url, galaxy_key=self.galaxy_key) + conn = Connection(galaxy_url=self.data.galaxy_url, galaxy_key=self.data.galaxy_key) tool = Tool(id="neutrons_fractal") params = Parameters() + params.add_input(name="option", value=self.data.fractal_type) with conn.connect() as galaxy_connection: data_store = galaxy_connection.create_data_store(name="fractal_store") data_store.persist() - output = tool.run(data_store, params) - output.get_dataset("output").download("tmp.png") - - with open("tmp.png", "rb") as image_file: - self.image_data = f"data:image/png;base64,{b64encode(image_file.read()).decode()}" + print("Executing fractal tool. This might take a few minutes.") + output = tool.run(data_store, params, wait=True) + output.get_dataset("output").download("image.png") + with open("image.png", "rb") as image_file: + self.data.image_data = f"data:image/png;base64,{b64encode(image_file.read()).decode()}" print("Fractal tool finished successfully.") diff --git a/code/episode_4/src/nova_tutorial/app/models/main_model.py b/code/episode_4/src/nova_tutorial/app/models/main_model.py old mode 100755 new mode 100644 index 6d5028af..bca4b83a --- a/code/episode_4/src/nova_tutorial/app/models/main_model.py +++ b/code/episode_4/src/nova_tutorial/app/models/main_model.py @@ -1,10 +1,11 @@ """Module for the main model.""" from pydantic import BaseModel, Field + from .fractal import Fractal -class MainModel(BaseModel): +class Config(BaseModel): """ A model class. @@ -22,4 +23,9 @@ class MainModel(BaseModel): examples=["user"], ) password: str = Field(default="test_password", title="User Password") - fractal: Fractal = Field(default_factory=Fractal) \ No newline at end of file + + +class MainModel: + def __init__(self): + self.config = Config() + self.fractal = Fractal() diff --git a/code/episode_4/src/nova_tutorial/app/mvvm_factory.py b/code/episode_4/src/nova_tutorial/app/mvvm_factory.py old mode 100755 new mode 100644 index 3b56e2b6..c11e5916 --- a/code/episode_4/src/nova_tutorial/app/mvvm_factory.py +++ b/code/episode_4/src/nova_tutorial/app/mvvm_factory.py @@ -3,13 +3,12 @@ from nova.mvvm.interface import BindingInterface from .models.main_model import MainModel -from .view_models.main import MainViewModel +from .view_models.main_view_model import MainViewModel def create_viewmodels(binding: BindingInterface) -> dict: model = MainModel() vm: dict = {} vm["main"] = MainViewModel(model, binding) - print(vm["main"].model.fractal.galaxy_key) return vm diff --git a/code/episode_4/src/nova_tutorial/app/view_models/__init__.py b/code/episode_4/src/nova_tutorial/app/view_models/__init__.py old mode 100755 new mode 100644 diff --git a/code/episode_4/src/nova_tutorial/app/view_models/main.py b/code/episode_4/src/nova_tutorial/app/view_models/main.py deleted file mode 100755 index 90d3c9a3..00000000 --- a/code/episode_4/src/nova_tutorial/app/view_models/main.py +++ /dev/null @@ -1,34 +0,0 @@ -"""Module for the main ViewModel.""" - -from typing import Any, Dict - -from nova.mvvm.interface import BindingInterface - -from ..models.main_model import MainModel - - -class MainViewModel(): - """Viewmodel class, used to create data<->view binding and react on changes from GUI.""" - - def __init__(self, model: MainModel, binding: BindingInterface): - self.model = model - - # here we create a bind that connects ViewModel with View. It returns a communicator object, - # that allows to update View from ViewModel (by calling update_view). - # self.model will be updated automatically on changes of connected fields in View, - # but one also can provide a callback function if they want to react to those events - # and/or process errors. - self.config_bind = binding.new_bind(self.model, callback_after_update=self.change_callback) - - def change_callback(self, results: Dict[str, Any]) -> None: - if results["error"]: - print(f"error in fields {results['errored']}, model not changed") - else: - print(f"model fields updated: {results['updated']}") - - def update_view(self) -> None: - self.config_bind.update_in_view(self.model) - - def run_fractal(self) -> None: - self.model.fractal.run_fractal_tool() - self.update_view() diff --git a/code/episode_4/src/nova_tutorial/app/views/__init__.py b/code/episode_4/src/nova_tutorial/app/views/__init__.py old mode 100755 new mode 100644 diff --git a/code/episode_4/src/nova_tutorial/app/views/fractal_tab.py b/code/episode_4/src/nova_tutorial/app/views/fractal_tab.py old mode 100755 new mode 100644 index f2ec0383..4767f833 --- a/code/episode_4/src/nova_tutorial/app/views/fractal_tab.py +++ b/code/episode_4/src/nova_tutorial/app/views/fractal_tab.py @@ -1,18 +1,20 @@ from trame.widgets import vuetify3 as vuetify from nova.trame.view.components import InputField -from nova_tutorial.app.view_models.main import MainViewModel +from nova.trame.view.layouts import VBoxLayout +from nova_tutorial.app.view_models.main_view_model import MainViewModel -class FractalTab: +class FractalTab: def __init__(self, view_model: MainViewModel) -> None: self.view_model = view_model + self.view_model.fractal_bind.connect("fractal") self.create_ui() def create_ui(self) -> None: - InputField(v_model="config.fractal.fractal_type") - vuetify.VBtn( - "Run Fractal", - click=self.view_model.run_fractal # calls the run_fractal_tool method - ) - vuetify.VImg(src=("config.fractal.image_data",), height="400", width="400") + with VBoxLayout(): + InputField(v_model="fractal.fractal_type") + with VBoxLayout(classes="mb-2", halign="start"): + vuetify.VBtn("Run Fractal", click=self.view_model.run_fractal) + with VBoxLayout(stretch=True): + vuetify.VImg(src=("fractal.image_data",), classes="h-100 w-100") diff --git a/code/episode_4/src/nova_tutorial/app/views/main.py b/code/episode_4/src/nova_tutorial/app/views/main.py deleted file mode 100755 index 2000c009..00000000 --- a/code/episode_4/src/nova_tutorial/app/views/main.py +++ /dev/null @@ -1,45 +0,0 @@ -"""Main file.""" - -import logging - -from nova.mvvm.trame_binding import TrameBinding -from nova.trame import ThemedApp -from trame.app import get_server - -from ..mvvm_factory import create_viewmodels -from ..view_models.main import MainViewModel -from .tab_content_panel import TabContentPanel -from .tabs_panel import TabsPanel - - -logger = logging.getLogger(__name__) -logger.setLevel(logging.INFO) - - -class MainApp(ThemedApp): - """Main application view class. Calls rendering of nested UI elements.""" - - def __init__(self) -> None: - super().__init__() - self.server = get_server(None, client_type="vue3") - binding = TrameBinding(self.server.state) - self.server.state.trame__title = "Nova Tutorial" - self.view_models = create_viewmodels(binding) - self.view_model: MainViewModel = self.view_models["main"] - self.create_ui() - - def create_ui(self) -> None: - self.state.trame__title = "Nova Tutorial" - - with super().create_ui() as layout: - layout.toolbar_title.set_text("Nova Tutorial") - with layout.pre_content: - TabsPanel(self.view_models["main"]) - with layout.content: - TabContentPanel( - self.server, - self.view_models["main"], - ) - with layout.post_content: - pass - return layout diff --git a/code/episode_4/src/nova_tutorial/app/views/sample_tab_1.py b/code/episode_4/src/nova_tutorial/app/views/sample_tab_1.py old mode 100755 new mode 100644 index 891cdd10..f5d062e5 --- a/code/episode_4/src/nova_tutorial/app/views/sample_tab_1.py +++ b/code/episode_4/src/nova_tutorial/app/views/sample_tab_1.py @@ -1,6 +1,7 @@ """Module for the Sample Tab 1.""" from nova.trame.view.components import InputField +from nova.trame.view.layouts import VBoxLayout class SampleTab1: @@ -10,4 +11,5 @@ def __init__(self) -> None: self.create_ui() def create_ui(self) -> None: - InputField(v_model="config.username") + with VBoxLayout(): + InputField(v_model="config.username") diff --git a/code/episode_4/src/nova_tutorial/app/views/sample_tab_2.py b/code/episode_4/src/nova_tutorial/app/views/sample_tab_2.py old mode 100755 new mode 100644 index 46765f0a..0e787b40 --- a/code/episode_4/src/nova_tutorial/app/views/sample_tab_2.py +++ b/code/episode_4/src/nova_tutorial/app/views/sample_tab_2.py @@ -1,6 +1,7 @@ """Module for the Sample Tab 2.""" from nova.trame.view.components import InputField +from nova.trame.view.layouts import VBoxLayout class SampleTab2: @@ -10,4 +11,5 @@ def __init__(self) -> None: self.create_ui() def create_ui(self) -> None: - InputField(v_model="config.password") + with VBoxLayout(): + InputField(v_model="config.password") diff --git a/code/episode_4/src/nova_tutorial/app/views/tab_content_panel.py b/code/episode_4/src/nova_tutorial/app/views/tab_content_panel.py old mode 100755 new mode 100644 index ab67bd63..dff310a9 --- a/code/episode_4/src/nova_tutorial/app/views/tab_content_panel.py +++ b/code/episode_4/src/nova_tutorial/app/views/tab_content_panel.py @@ -1,12 +1,13 @@ """Module for the Tab Content panel.""" -from trame.widgets import vuetify3 as vuetify +from nova.trame.view.layouts import VBoxLayout from trame_server import Server -from ..view_models.main import MainViewModel +from ..view_models.main_view_model import MainViewModel +from .fractal_tab import FractalTab from .sample_tab_1 import SampleTab1 from .sample_tab_2 import SampleTab2 -from .fractal_tab import FractalTab # Import the FractalTab + class TabContentPanel: """View class to render content for a selected tab.""" @@ -18,14 +19,9 @@ def __init__(self, server: Server, view_model: MainViewModel) -> None: self.create_ui() def create_ui(self) -> None: - with vuetify.VForm(ref="form") as self.f: - with vuetify.VContainer(classes="pa-0", fluid=True): - with vuetify.VCard(): - with vuetify.VWindow(v_model="active_tab"): - with vuetify.VWindowItem(value=1): - FractalTab(self.view_model) # Add FractalTab - with vuetify.VWindowItem(value=2): - SampleTab1() - with vuetify.VWindowItem(value=3): - SampleTab2() - + with VBoxLayout(v_show="view_state.active_tab == 0", stretch=True): + FractalTab(self.view_model) # Add FractalTab + with VBoxLayout(v_show="view_state.active_tab == 1", stretch=True): + SampleTab1() + with VBoxLayout(v_show="view_state.active_tab == 2", stretch=True): + SampleTab2() diff --git a/code/episode_4/src/nova_tutorial/app/views/tabs_panel.py b/code/episode_4/src/nova_tutorial/app/views/tabs_panel.py old mode 100755 new mode 100644 index 672b25d5..ce32269a --- a/code/episode_4/src/nova_tutorial/app/views/tabs_panel.py +++ b/code/episode_4/src/nova_tutorial/app/views/tabs_panel.py @@ -1,8 +1,9 @@ """Module for the Tab panel.""" +from trame.widgets import client from trame.widgets import vuetify3 as vuetify -from ..view_models.main import MainViewModel +from ..view_models.main_view_model import MainViewModel class TabsPanel: @@ -11,10 +12,12 @@ class TabsPanel: def __init__(self, view_model: MainViewModel): self.view_model = view_model self.view_model.config_bind.connect("config") + self.view_model.view_state_bind.connect("view_state") self.create_ui() def create_ui(self) -> None: - 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- [tool.ruff.lint.pydocstyle] convention = "numpy" @@ -72,20 +102,4 @@ omit = [ ] [tool.coverage.run] -command_line = "-m pytest --junit-xml=reports/junit.xml" -data_file = "reports/.coverage" - -[tool.poetry.dev-dependencies] -mypy = ">=1.10.0" -pre-commit = ">=2.20.0" -coverage = ">=6.4.3" -pytest = "*" -ruff = ">=0.6.2" -copier=">=9.3" -sphinx = "*" -sphinx-rtd-theme = "*" -sphinxcontrib-napoleon ="*" -tomli = "*" - -[tool.poetry.scripts] -app = "nova_tutorial.app:main" +command_line = "-m pytest --jun \ No newline at end of file diff --git a/code/episode_5/src/nova_tutorial/__init__.py b/code/episode_5/src/nova_tutorial/__init__.py old mode 100755 new mode 100644 diff --git a/code/episode_5/src/nova_tutorial/app/__init__.py b/code/episode_5/src/nova_tutorial/app/__init__.py old mode 100755 new mode 100644 diff --git a/code/episode_5/src/nova_tutorial/app/__main__.py b/code/episode_5/src/nova_tutorial/app/__main__.py old mode 100755 new mode 100644 diff --git a/code/episode_5/src/nova_tutorial/app/main.py b/code/episode_5/src/nova_tutorial/app/main.py old mode 100755 new mode 100644 index add49c11..68cf8a37 --- a/code/episode_5/src/nova_tutorial/app/main.py +++ b/code/episode_5/src/nova_tutorial/app/main.py @@ -1,12 +1,11 @@ """Main Application.""" import sys -from .models.fractal import Fractal def main() -> None: kwargs = {} - from .views.main import MainApp + from .views.main_view import MainApp app = MainApp() for arg in sys.argv[2:]: diff --git a/code/episode_5/src/nova_tutorial/app/models/__init__.py b/code/episode_5/src/nova_tutorial/app/models/__init__.py old mode 100755 new mode 100644 diff --git a/code/episode_5/src/nova_tutorial/app/models/fractal.py b/code/episode_5/src/nova_tutorial/app/models/fractal.py old mode 100755 new mode 100644 index 0cf2e0cc..91f7af4e --- a/code/episode_5/src/nova_tutorial/app/models/fractal.py +++ b/code/episode_5/src/nova_tutorial/app/models/fractal.py @@ -1,6 +1,7 @@ import os from base64 import b64encode from enum import Enum +from typing import Callable, Literal from pydantic import BaseModel, Field from nova.galaxy import Connection, Parameters, Tool @@ -13,25 +14,43 @@ class FractalTypeOptions(str, Enum): markus = "markus" -class Fractal(BaseModel): - fractal_type: FractalTypeOptions = Field(default=FractalTypeOptions.mandelbrot) - galaxy_url: str = Field(default_factory=lambda: os.getenv("GALAXY_URL"), description="NDIP Galaxy URL") - galaxy_key: str = Field(default_factory=lambda: os.getenv("GALAXY_API_KEY"), description="NDIP Galaxy API Key") +class FractalData(BaseModel): + fractal_type: FractalTypeOptions = Field( + default=FractalTypeOptions.mandelbrot, title="Fractal Type" + ) + galaxy_url: str = Field( + default=os.getenv("GALAXY_URL", ""), description="NDIP Galaxy URL" + ) + galaxy_key: str = Field( + default=os.getenv("GALAXY_API_KEY", ""), description="NDIP Galaxy API Key" + ) image_data: str = Field(default="", description="Base64 encoded PNG") - def run_fractal_tool(self): - conn = Connection(galaxy_url=self.galaxy_url, galaxy_key=self.galaxy_key) + +class Fractal: + def __init__(self): + self.data = FractalData(fractal_type="mandelbrot") + + def set_fractal_type(self, fractal_type: str): + self.data.fractal_type = fractal_type + + def run_fractal_tool(self, progress: Callable): + conn = Connection( + galaxy_url=self.data.galaxy_url, galaxy_key=self.data.galaxy_key + ) tool = Tool(id="neutrons_fractal") params = Parameters() - params.add_input(name="option", value=self.fractal_type) + params.add_input(name="option", value=self.data.fractal_type) with conn.connect() as galaxy_connection: data_store = galaxy_connection.create_data_store(name="fractal_store") data_store.persist() print("Executing fractal tool. This might take a few minutes.") - output = tool.run(data_store, params) - output.get_dataset("output").download("tmp.png") + output = tool.run(data_store, params, wait=True) + output.get_dataset("output").download("image.png") - with open("tmp.png", "rb") as image_file: - self.image_data = f"data:image/png;base64,{b64encode(image_file.read()).decode()}" + with open("image.png", "rb") as image_file: + self.data.image_data = ( + f"data:image/png;base64,{b64encode(image_file.read()).decode()}" + ) print("Fractal tool finished successfully.") diff --git a/code/episode_5/src/nova_tutorial/app/models/main_model.py b/code/episode_5/src/nova_tutorial/app/models/main_model.py old mode 100755 new mode 100644 index 1a08559c..c05b3dbc --- a/code/episode_5/src/nova_tutorial/app/models/main_model.py +++ b/code/episode_5/src/nova_tutorial/app/models/main_model.py @@ -1,10 +1,11 @@ """Module for the main model.""" from pydantic import BaseModel, Field + from .fractal import Fractal -class MainModel(BaseModel): +class Config(BaseModel): """ A model class. @@ -21,6 +22,11 @@ class MainModel(BaseModel): description="Please provide the name of the user", examples=["user"], ) - password: str = Field(default="test_password", title="User Password") file: str = Field(default="", title="Select a File") - fractal: Fractal = Field(default_factory=Fractal) + password: str = Field(default="test_password", title="User Password") + + +class MainModel: + def __init__(self): + self.config = Config() + self.fractal = Fractal() diff --git a/code/episode_5/src/nova_tutorial/app/mvvm_factory.py b/code/episode_5/src/nova_tutorial/app/mvvm_factory.py old mode 100755 new mode 100644 index 3b56e2b6..c11e5916 --- a/code/episode_5/src/nova_tutorial/app/mvvm_factory.py +++ b/code/episode_5/src/nova_tutorial/app/mvvm_factory.py @@ -3,13 +3,12 @@ from nova.mvvm.interface import BindingInterface from .models.main_model import MainModel -from .view_models.main import MainViewModel +from .view_models.main_view_model import MainViewModel def create_viewmodels(binding: BindingInterface) -> dict: model = MainModel() vm: dict = {} vm["main"] = MainViewModel(model, binding) - print(vm["main"].model.fractal.galaxy_key) return vm diff --git a/code/episode_5/src/nova_tutorial/app/view_models/__init__.py b/code/episode_5/src/nova_tutorial/app/view_models/__init__.py old mode 100755 new mode 100644 diff --git a/code/episode_5/src/nova_tutorial/app/view_models/main.py b/code/episode_5/src/nova_tutorial/app/view_models/main.py deleted file mode 100755 index d3941e81..00000000 --- a/code/episode_5/src/nova_tutorial/app/view_models/main.py +++ /dev/null @@ -1,56 +0,0 @@ -"""Module for the main ViewModel.""" - -from asyncio import create_task, sleep -from threading import Thread -from typing import Any, Dict - -from nova.mvvm.interface import BindingInterface - -from ..models.main_model import MainModel - - -class MainViewModel: - """Viewmodel class, used to create data<->view binding and react on changes from GUI.""" - - def __init__(self, model: MainModel, binding: BindingInterface): - self.model = model - self.running = False - - # here we create a bind that connects ViewModel with View. It returns a communicator object, - # that allows to update View from ViewModel (by calling update_view). - # self.model will be updated automatically on changes of connected fields in View, - # but one also can provide a callback function if they want to react to those events - # and/or process errors. - self.config_bind = binding.new_bind(self.model, callback_after_update=self.change_callback) - self.running_bind = binding.new_bind() - - def change_callback(self, results: Dict[str, Any]) -> None: - if results["error"]: - print(f"error in fields {results['errored']}, model not changed") - else: - print(f"model fields updated: {results['updated']}") - - def update_view(self) -> None: - self.config_bind.update_in_view(self.model) - self.running_bind.update_in_view(self.running) - - def run_fractal(self) -> None: - self.running = True - self.update_view() - - # update_view won't take effect until this method returns a value, so we must offload this long-running task to - # a background thread for our conditional rendering to work. - fractal_tool_thread = Thread(target=self.run_fractal_in_background, daemon=True) - fractal_tool_thread.start() - - # We also need to know when the tool is done running so that we can know when to update the view. - create_task(self.monitor_fractal()) - - def run_fractal_in_background(self) -> None: - self.model.fractal.run_fractal_tool() - self.running = False - - async def monitor_fractal(self) -> None: - while self.running: - await sleep(0.1) - self.update_view() diff --git a/code/episode_5/src/nova_tutorial/app/views/__init__.py b/code/episode_5/src/nova_tutorial/app/views/__init__.py old mode 100755 new mode 100644 diff --git a/code/episode_5/src/nova_tutorial/app/views/fractal_tab.py b/code/episode_5/src/nova_tutorial/app/views/fractal_tab.py old mode 100755 new mode 100644 index fee0a6e4..25869165 --- a/code/episode_5/src/nova_tutorial/app/views/fractal_tab.py +++ b/code/episode_5/src/nova_tutorial/app/views/fractal_tab.py @@ -1,16 +1,19 @@ from trame.widgets import vuetify3 as vuetify from nova.trame.view.components import InputField -from nova_tutorial.app.view_models.main import MainViewModel +from nova.trame.view.layouts import VBoxLayout +from nova_tutorial.app.view_models.main_view_model import MainViewModel class FractalTab: def __init__(self, view_model: MainViewModel) -> None: self.view_model = view_model - self.view_model.running_bind.connect("running") + self.view_model.fractal_bind.connect("fractal") self.create_ui() def create_ui(self) -> None: - InputField(v_model="config.fractal.fractal_type", classes="mb-2", type="select") - vuetify.VProgressCircular(v_if="running", indeterminate=True) - vuetify.VImg(v_else=True, src=("config.fractal.image_data",), height="400", width="400") + with VBoxLayout(): + InputField(v_model="fractal.fractal_type", type="select") + with VBoxLayout(halign="center", valign="center", stretch=True): + vuetify.VProgressCircular(v_if="view_state.running", indeterminate=True) + vuetify.VImg(v_else=True, src=("fractal.image_data",), classes="h-100 w-100") diff --git a/code/episode_5/src/nova_tutorial/app/views/main.py b/code/episode_5/src/nova_tutorial/app/views/main.py deleted file mode 100755 index 7f1bd3a0..00000000 --- a/code/episode_5/src/nova_tutorial/app/views/main.py +++ /dev/null @@ -1,49 +0,0 @@ -"""Main file.""" - -import logging - -from nova.mvvm.trame_binding import TrameBinding -from nova.trame import ThemedApp -from nova.trame.view import layouts -from trame.app import get_server -from trame.widgets import vuetify3 as vuetify - -from ..mvvm_factory import create_viewmodels -from ..view_models.main import MainViewModel -from .tab_content_panel import TabContentPanel -from .tabs_panel import TabsPanel - -logger = logging.getLogger(__name__) -logger.setLevel(logging.INFO) - - -class MainApp(ThemedApp): - """Main application view class. Calls rendering of nested UI elements.""" - - def __init__(self) -> None: - super().__init__() - self.server = get_server(None, client_type="vue3") - binding = TrameBinding(self.server.state) - self.view_models = create_viewmodels(binding) - self.view_model: MainViewModel = self.view_models["main"] - self.create_ui() - - def create_ui(self) -> None: - self.state.trame__title = "Fractal Tool GUI" - - with super().create_ui() as layout: - layout.toolbar_title.set_text("Fractal Tool GUI") - with layout.pre_content: - TabsPanel(self.view_models["main"]) - with layout.content: - TabContentPanel( - self.server, - self.view_models["main"], - ) - with layout.post_content: - with layouts.HBoxLayout(classes="my-2", halign="center"): - vuetify.VBtn( - "Run Fractal", - click=self.view_model.run_fractal, # calls the run_fractal_tool method - ) - return layout diff --git a/code/episode_5/src/nova_tutorial/app/views/sample_tab_1.py b/code/episode_5/src/nova_tutorial/app/views/sample_tab_1.py old mode 100755 new mode 100644 index 5f5fd62c..f9f586a9 --- a/code/episode_5/src/nova_tutorial/app/views/sample_tab_1.py +++ b/code/episode_5/src/nova_tutorial/app/views/sample_tab_1.py @@ -1,6 +1,7 @@ """Module for the Sample Tab 1.""" from nova.trame.view.components import InputField, RemoteFileInput +from nova.trame.view.layouts import VBoxLayout class SampleTab1: @@ -10,5 +11,6 @@ def __init__(self) -> None: self.create_ui() def create_ui(self) -> None: - RemoteFileInput(v_model="config.file", base_paths=["/HFIR", "/SNS"]) - InputField(v_model="config.username") + with VBoxLayout(): + RemoteFileInput(v_model="config.file", base_paths=["/HFIR", "/SNS"]) + InputField(v_model="config.username") diff --git a/code/episode_5/src/nova_tutorial/app/views/sample_tab_2.py b/code/episode_5/src/nova_tutorial/app/views/sample_tab_2.py old mode 100755 new mode 100644 index 46765f0a..0e787b40 --- a/code/episode_5/src/nova_tutorial/app/views/sample_tab_2.py +++ b/code/episode_5/src/nova_tutorial/app/views/sample_tab_2.py @@ -1,6 +1,7 @@ """Module for the Sample Tab 2.""" from nova.trame.view.components import InputField +from nova.trame.view.layouts import VBoxLayout class SampleTab2: @@ -10,4 +11,5 @@ def __init__(self) -> None: self.create_ui() def create_ui(self) -> None: - InputField(v_model="config.password") + with VBoxLayout(): + InputField(v_model="config.password") diff --git a/code/episode_5/src/nova_tutorial/app/views/tab_content_panel.py b/code/episode_5/src/nova_tutorial/app/views/tab_content_panel.py old mode 100755 new mode 100644 index ab67bd63..dff310a9 --- a/code/episode_5/src/nova_tutorial/app/views/tab_content_panel.py +++ b/code/episode_5/src/nova_tutorial/app/views/tab_content_panel.py @@ -1,12 +1,13 @@ """Module for the Tab Content panel.""" -from trame.widgets import vuetify3 as vuetify +from nova.trame.view.layouts import VBoxLayout from trame_server import Server -from ..view_models.main import MainViewModel +from ..view_models.main_view_model import MainViewModel +from .fractal_tab import FractalTab from .sample_tab_1 import SampleTab1 from .sample_tab_2 import SampleTab2 -from .fractal_tab import FractalTab # Import the FractalTab + class TabContentPanel: """View class to render content for a selected tab.""" @@ -18,14 +19,9 @@ def __init__(self, server: Server, view_model: MainViewModel) -> None: self.create_ui() def create_ui(self) -> None: - with vuetify.VForm(ref="form") as self.f: - with vuetify.VContainer(classes="pa-0", fluid=True): - with vuetify.VCard(): - with vuetify.VWindow(v_model="active_tab"): - with vuetify.VWindowItem(value=1): - FractalTab(self.view_model) # Add FractalTab - with vuetify.VWindowItem(value=2): - SampleTab1() - with vuetify.VWindowItem(value=3): - SampleTab2() - + with VBoxLayout(v_show="view_state.active_tab == 0", stretch=True): + FractalTab(self.view_model) # Add FractalTab + with VBoxLayout(v_show="view_state.active_tab == 1", stretch=True): + SampleTab1() + with VBoxLayout(v_show="view_state.active_tab == 2", stretch=True): + SampleTab2() diff --git a/code/episode_5/src/nova_tutorial/app/views/tabs_panel.py b/code/episode_5/src/nova_tutorial/app/views/tabs_panel.py old mode 100755 new mode 100644 index ac1f6ab3..ce32269a --- a/code/episode_5/src/nova_tutorial/app/views/tabs_panel.py +++ b/code/episode_5/src/nova_tutorial/app/views/tabs_panel.py @@ -1,8 +1,9 @@ """Module for the Tab panel.""" +from trame.widgets import client from trame.widgets import vuetify3 as vuetify -from ..view_models.main import MainViewModel +from ..view_models.main_view_model import MainViewModel class TabsPanel: @@ -11,11 +12,12 @@ class TabsPanel: def __init__(self, view_model: MainViewModel): self.view_model = view_model self.view_model.config_bind.connect("config") - #self.view_model.fractal_bind.connect("fractal") + self.view_model.view_state_bind.connect("view_state") self.create_ui() def create_ui(self) -> None: - with vuetify.VTabs(v_model=("active_tab", 0), classes="pl-5"): - vuetify.VTab("Fractal", value=1) # Add Fractal Tab - vuetify.VTab("Sample Tab 1", value=2) - vuetify.VTab("Sample Tab 2", value=3) + with client.DeepReactive("view_state"): + with vuetify.VTabs(v_model="view_state.active_tab", classes="pl-5"): + vuetify.VTab("Fractal", value=0) # Add Fractal Tab + vuetify.VTab("Sample Tab 1", value=1) + vuetify.VTab("Sample Tab 2", value=2) diff --git a/code/episode_6/advanced_pydantic/.copier-answers.yml b/code/episode_6/advanced_pydantic/.copier-answers.yml deleted file mode 100644 index 0e125b82..00000000 --- a/code/episode_6/advanced_pydantic/.copier-answers.yml +++ /dev/null @@ -1,9 +0,0 @@ -# Please do not edit or delete this file. It is needed to be able to update project from template. -_commit: '0.13' -_src_path: https://code.ornl.gov/ndip/project-templates/nova-application-template.git -gui: false -project_name: Advanced Pydantic -publish_docs: false -publish_to_pypi: false -python_package: advanced-pydantic -use_mantid: false diff --git a/code/episode_6/advanced_pydantic/.dockerignore b/code/episode_6/advanced_pydantic/.dockerignore deleted file mode 100644 index 75e9bfa5..00000000 --- a/code/episode_6/advanced_pydantic/.dockerignore +++ /dev/null @@ -1 +0,0 @@ -dockerfiles/Dockerfile diff --git a/code/episode_6/advanced_pydantic/.gitignore b/code/episode_6/advanced_pydantic/.gitignore deleted file mode 100644 index bb338b20..00000000 --- a/code/episode_6/advanced_pydantic/.gitignore +++ /dev/null @@ -1,166 +0,0 @@ -# Byte-compiled / optimized / DLL files -__pycache__/ -*.py[cod] -*$py.class - -# C extensions -*.so - -# Distribution / packaging -.Python -build/ -develop-eggs/ -dist/ -downloads/ -eggs/ -.eggs/ -lib/ -lib64/ -parts/ -sdist/ -var/ -wheels/ -share/python-wheels/ -*.egg-info/ -.installed.cfg -*.egg -MANIFEST - -# PyInstaller -# Usually these files are written by a python script from a template -# before PyInstaller builds the exe, so as to inject date/other infos into it. -*.manifest -*.spec - -# Installer logs -pip-log.txt -pip-delete-this-directory.txt - -# Unit test / coverage reports -htmlcov/ -.tox/ -.nox/ -.coverage -.coverage.* -.cache -nosetests.xml -coverage.xml -*.cover -*.py,cover -.hypothesis/ -.pytest_cache/ -cover/ - -# Translations -*.mo -*.pot - -# Django stuff: -*.log -local_settings.py -db.sqlite3 -db.sqlite3-journal - -# Flask stuff: -instance/ -.webassets-cache - -# Scrapy stuff: -.scrapy - -# Sphinx documentation -docs/_build/ - -# PyBuilder -.pybuilder/ -target/ - -# Jupyter Notebook -.ipynb_checkpoints - -# IPython -profile_default/ -ipython_config.py - -# pyenv -# For a library or package, you might want to ignore these files since the code is -# intended to run in multiple environments; otherwise, check them in: -# .python-version - -# pipenv -# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control. -# However, in case of collaboration, if having platform-specific dependencies or dependencies -# having no cross-platform support, pipenv may install dependencies that don't work, or not -# install all needed dependencies. -#Pipfile.lock - -# poetry -# Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control. -# This is especially recommended for binary packages to ensure reproducibility, and is more -# commonly ignored for libraries. -# https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control -#poetry.lock - -# pdm -# Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control. -#pdm.lock -# pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it -# in version control. -# https://pdm.fming.dev/#use-with-ide -.pdm.toml - -# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm -__pypackages__/ - -# Celery stuff -celerybeat-schedule -celerybeat.pid - -# SageMath parsed files -*.sage.py - -# Environments -.env -.venv -env/ -venv/ -ENV/ -env.bak/ -venv.bak/ - -# Spyder project settings -.spyderproject -.spyproject - -# Rope project settings -.ropeproject - -# mkdocs documentation -/site - -# mypy -.mypy_cache/ -.dmypy.json -dmypy.json - -# Pyre type checker -.pyre/ - -# pytype static type analyzer -.pytype/ - -# Cython debug symbols -cython_debug/ - -# PyCharm -# We ingore the whole .idea folder -# For more fine tuning, JetBrains specific template is maintained in a separate JetBrains.gitignore that can -# be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore -# and can be added to the global gitignore or merged into this file. -.idea - - -.envrc - - -junit.xml diff --git a/code/episode_6/advanced_pydantic/.gitlab-ci.yml b/code/episode_6/advanced_pydantic/.gitlab-ci.yml deleted file mode 100644 index 67024b69..00000000 --- a/code/episode_6/advanced_pydantic/.gitlab-ci.yml +++ /dev/null @@ -1,125 +0,0 @@ -workflow: - rules: - - if: $CI_COMMIT_TAG - when: never - - if: '$CI_PIPELINE_SOURCE == "merge_request_event"' - when: never - - when: always - -stages: - - lint - - test - - tag - - publish - -variables: - GIT_STRATEGY: clone - IMAGE_NAME: ${NDIP_DOCKER_REPOSITORY}/${CI_PROJECT_PATH} - -before_script: - - curl https://code.ornl.gov/rse-deployment/rse-sharables/raw/master/rse-bash-modules.sh -O - - source rse-bash-modules.sh - - func_rse_docker_cleanup - - docker login -u $NDIP_DOCKER_USER -p $NDIP_DOCKER_PASSWORD $NDIP_DOCKER_REPOSITORY - - export VERSION=$(cat pyproject.toml | grep "version =" | head -n 1 | awk '{ print $3 }' | tr -d '"') -after_script: - - curl https://code.ornl.gov/rse-deployment/rse-sharables/raw/master/rse-bash-modules.sh -O - - source rse-bash-modules.sh - - func_rse_docker_cleanup - -lint-check: - stage: lint - script: - - docker build -f dockerfiles/Dockerfile --target source -t image . - - docker run -u `id -u`:`id -g` image poetry run ruff check - - docker run -u `id -u`:`id -g` image poetry run ruff format --check - - docker run -u `id -u`:`id -g` image poetry run mypy . - - docker tag image ${IMAGE_NAME}:src-${CI_COMMIT_SHA} - - docker push ${IMAGE_NAME}:src-${CI_COMMIT_SHA} - tags: - - rse-multi-builder - -unit-tests: - stage: test - script: - - mkdir reports - - docker run -u `id -u`:`id -g` -v `pwd`/reports:/src/reports ${IMAGE_NAME}:src-${CI_COMMIT_SHA} poetry run coverage run - - docker run -u `id -u`:`id -g` -v `pwd`/reports:/src/reports ${IMAGE_NAME}:src-${CI_COMMIT_SHA} poetry run coverage report - - docker run -u `id -u`:`id -g` -v `pwd`/reports:/src/reports ${IMAGE_NAME}:src-${CI_COMMIT_SHA} poetry run coverage xml -o reports/coverage.xml - - sed -i "s:/src:${CI_BUILDS_DIR}/${CI_PROJECT_PATH}:" reports/coverage.xml - - coverage: '/TOTAL.*? (100(?:\.0+)?\%|[1-9]?\d(?:\.\d+)?\%)$/' - artifacts: - when: always - reports: - junit: reports/junit.xml - coverage_report: - coverage_format: cobertura - path: reports/coverage.xml - tags: - - rse-multi-builder - -docs-test: - stage: test - script: - - docker run -u `id -u`:`id -g` ${IMAGE_NAME}:src-${CI_COMMIT_SHA} bash build_docs.sh - tags: - - rse-multi-builder - - -tag-release: - stage: tag - rules: - - if: $CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH - when: always - - when: never - script: - - git config user.email "$GITLAB_USER_EMAIL" - - git config user.name "$GITLAB_USER_NAME" - - > - if [ -z $(git ls-remote --tags origin "$VERSION") ]; then - git remote add gitlab https://oauth2:${NDIP_GROUP_TOKEN}@${CI_SERVER_HOST}/${CI_PROJECT_PATH}.git - git tag ${VERSION} - git push gitlab --tags - fi - tags: - - rse-multi-builder - - -build-image: - stage: publish - variables: - OVERWRITE_IMAGE: "false" - when: manual - script: - - IMAGE_TAG=${VERSION} - - docker build -f dockerfiles/Dockerfile -t image --target run --build-arg SOURCE_IMAGE=${IMAGE_NAME}:src-${CI_COMMIT_SHA} . - - docker tag image ${IMAGE_NAME}:bin-${CI_COMMIT_SHA} - - docker push ${IMAGE_NAME}:bin-${CI_COMMIT_SHA} - - docker tag image ${IMAGE_NAME}:latest - - docker push ${IMAGE_NAME}:latest - - > - if ! docker pull ${IMAGE_NAME}:${IMAGE_TAG} || [ "$OVERWRITE_IMAGE" == "true" ]; then - docker tag image ${IMAGE_NAME}:${IMAGE_TAG} - docker push ${IMAGE_NAME}:${IMAGE_TAG} - else - echo tag ${IMAGE_TAG} already exists in ${NDIP_DOCKER_REPOSITORY}. Use OVERWRITE_IMAGE="true", delete image in the repository or change the tag - exit 1 - fi - tags: - - rse-multi-builder - -package-build: - stage: publish - script: - - > - docker run - -u `id -u`:`id -g` - ${IMAGE_NAME}:src-${CI_COMMIT_SHA} - bash -c " - poetry config repositories.gitlab_repo ${CI_API_V4_URL}/projects/${CI_PROJECT_ID}/packages/pypi && - poetry publish -u gitlab-ci-token -p ${CI_JOB_TOKEN} -r gitlab_repo - " - when: manual - tags: - - rse-multi-builder diff --git a/code/episode_6/advanced_pydantic/.pre-commit-config.yaml b/code/episode_6/advanced_pydantic/.pre-commit-config.yaml deleted file mode 100644 index 302be768..00000000 --- a/code/episode_6/advanced_pydantic/.pre-commit-config.yaml +++ /dev/null @@ -1,27 +0,0 @@ -repos: -- repo: https://github.com/pre-commit/pre-commit-hooks - rev: v4.6.0 - hooks: - - id: check-added-large-files - args: [--maxkb=8192] - - id: check-merge-conflict - - id: check-yaml - args: [--allow-multiple-documents] - - id: end-of-file-fixer - - id: check-toml - - id: trailing-whitespace -- repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.6.2 - hooks: - - id: ruff - args: [--fix, --exit-non-zero-on-fix] - - id: ruff-format -- repo: local - hooks: - - id: mypy - name: mypy - entry: poetry run mypy . - language: system - types: [python] - verbose: true - pass_filenames: false diff --git a/code/episode_6/advanced_pydantic/.vscode/extensions.json b/code/episode_6/advanced_pydantic/.vscode/extensions.json deleted file mode 100644 index 18a8fa1e..00000000 --- a/code/episode_6/advanced_pydantic/.vscode/extensions.json +++ /dev/null @@ -1,6 +0,0 @@ -{ - "recommendations": [ - "charliermarsh.ruff", - "ms-python.mypy-type-checker" - ] -} diff --git a/code/episode_6/advanced_pydantic/.vscode/launch.json b/code/episode_6/advanced_pydantic/.vscode/launch.json deleted file mode 100644 index 0a1ddce4..00000000 --- a/code/episode_6/advanced_pydantic/.vscode/launch.json +++ /dev/null @@ -1,10 +0,0 @@ -{ - "configurations": [{ - "name": "Launch", - "type": "debugpy", - "request": "launch", - "cwd": "${workspaceFolder}", - "module": "advanced_pydantic", - "args": [] - }] -} diff --git a/code/episode_6/advanced_pydantic/.vscode/settings.json b/code/episode_6/advanced_pydantic/.vscode/settings.json deleted file mode 100644 index 8700fea6..00000000 --- a/code/episode_6/advanced_pydantic/.vscode/settings.json +++ /dev/null @@ -1,10 +0,0 @@ -{ - "[python]": { - "editor.defaultFormatter": "charliermarsh.ruff" - }, - "python.testing.pytestArgs": [ - "tests" - ], - "python.testing.unittestEnabled": false, - "python.testing.pytestEnabled": true -} diff --git a/code/episode_6/advanced_pydantic/CODE_OF_CONDUCT.md b/code/episode_6/advanced_pydantic/CODE_OF_CONDUCT.md deleted file mode 100644 index 4db92857..00000000 --- a/code/episode_6/advanced_pydantic/CODE_OF_CONDUCT.md +++ /dev/null @@ -1,128 +0,0 @@ -# Contributor Covenant Code of Conduct - -## Our Pledge - -We as members, contributors, and leaders pledge to make participation in our -community a harassment-free experience for everyone, regardless of age, body -size, visible or invisible disability, ethnicity, sex characteristics, gender -identity and expression, level of experience, education, socioeconomic status, -nationality, personal appearance, race, religion, or sexual identity -and orientation. - -We pledge to act and interact in ways that contribute to an open, welcoming, -diverse, inclusive, and healthy community. - -## Our Standards - -Examples of behavior that contributes to a positive environment for our -community include: - -* Demonstrating empathy and kindness toward other people -* Being respectful of differing opinions, viewpoints, and experiences -* Giving and gracefully accepting constructive feedback -* Accepting responsibility and apologizing to those affected by our mistakes, - and learning from the experience -* Focusing on what is best not just for us as individuals, but for the - overall community - -Examples of unacceptable behavior include: - -* The use of sexualized language or imagery, and sexual attention or - advances of any kind -* Trolling, insulting or derogatory comments, and personal or political attacks -* Public or private harassment -* Publishing others' private information, such as a physical or email - address, without their explicit permission -* Other conduct which could reasonably be considered inappropriate in a - professional setting - -## Enforcement Responsibilities - -Community leaders are responsible for clarifying and enforcing our standards of -acceptable behavior and will take appropriate and fair corrective action in -response to any behavior that they deem inappropriate, threatening, offensive, -or harmful. - -Community leaders have the right and responsibility to remove, edit, or reject -comments, commits, code, wiki edits, issues, and other contributions that are -not aligned to this Code of Conduct, and will communicate reasons for moderation -decisions when appropriate. - -## Scope - -This Code of Conduct applies within all community spaces, and also applies when -an individual is officially representing the community in public spaces. -Examples of representing our community include using an official e-mail address, -posting via an official social media account, or acting as an appointed -representative at an online or offline event. - -## Enforcement - -Instances of abusive, harassing, or otherwise unacceptable behavior may be -reported to the community leaders responsible for enforcement at -watsongr@ornl.gov. -All complaints will be reviewed and investigated promptly and fairly. - -All community leaders are obligated to respect the privacy and security of the -reporter of any incident. - -## Enforcement Guidelines - -Community leaders will follow these Community Impact Guidelines in determining -the consequences for any action they deem in violation of this Code of Conduct: - -### 1. Correction - -**Community Impact**: Use of inappropriate language or other behavior deemed -unprofessional or unwelcome in the community. - -**Consequence**: A private, written warning from community leaders, providing -clarity around the nature of the violation and an explanation of why the -behavior was inappropriate. A public apology may be requested. - -### 2. Warning - -**Community Impact**: A violation through a single incident or series -of actions. - -**Consequence**: A warning with consequences for continued behavior. No -interaction with the people involved, including unsolicited interaction with -those enforcing the Code of Conduct, for a specified period of time. This -includes avoiding interactions in community spaces as well as external channels -like social media. Violating these terms may lead to a temporary or -permanent ban. - -### 3. Temporary Ban - -**Community Impact**: A serious violation of community standards, including -sustained inappropriate behavior. - -**Consequence**: A temporary ban from any sort of interaction or public -communication with the community for a specified period of time. No public or -private interaction with the people involved, including unsolicited interaction -with those enforcing the Code of Conduct, is allowed during this period. -Violating these terms may lead to a permanent ban. - -### 4. Permanent Ban - -**Community Impact**: Demonstrating a pattern of violation of community -standards, including sustained inappropriate behavior, harassment of an -individual, or aggression toward or disparagement of classes of individuals. - -**Consequence**: A permanent ban from any sort of public interaction within -the community. - -## Attribution - -This Code of Conduct is adapted from the [Contributor Covenant][homepage], -version 2.0, available at -https://www.contributor-covenant.org/version/2/0/code_of_conduct.html. - -Community Impact Guidelines were inspired by [Mozilla's code of conduct -enforcement ladder](https://github.com/mozilla/diversity). - -[homepage]: https://www.contributor-covenant.org - -For answers to common questions about this code of conduct, see the FAQ at -https://www.contributor-covenant.org/faq. Translations are available at -https://www.contributor-covenant.org/translations. diff --git a/code/episode_6/advanced_pydantic/CONTRIBUTING.md b/code/episode_6/advanced_pydantic/CONTRIBUTING.md deleted file mode 100644 index f1b779ce..00000000 --- a/code/episode_6/advanced_pydantic/CONTRIBUTING.md +++ /dev/null @@ -1,41 +0,0 @@ -# Contributing to Advanced Pydantic - -Thank you for considering contributing to Advanced Pydantic! -This document provides guidelines to help you contribute effectively and ensure a smooth process for everyone involved. - -## Getting Started - -To start contributing to this project, you will need an ORNL's GitLab account. -If you are unfamiliar with GitLab or version control, -consider reviewing GitLab's [Documentation](https://docs.gitlab.com/). - -## How to Contribute - -### Reporting Bugs - -If you find a bug in the project, please open an issue on GitLab with a clear and concise description. Make sure to include: - -- Steps to reproduce the bug. -- Expected behavior. -- Actual behavior. -- Any relevant screenshots, logs, or stack traces. - -### Suggesting Features - -We welcome feature suggestions! To propose a new feature: - -1. Open an issue on GitLab with the title "Feature Request: [Feature Name]". -2. Provide a detailed description of the proposed feature. -3. Explain why this feature would be useful for the project. -4. Include any relevant examples or mockups. - -### Submitting Changes - -If you'd like to contribute code changes, please follow the following guidelines: - -- [Working on a feature](https://calvera.ornl.gov/docs/dev/project_management/gitlab/single-repo/) -- [Style guidelines](https://calvera.ornl.gov/docs/dev/project_management/style_guidelines/) - -## Code of Conduct - -Please adhere to the project's [Code of Conduct](CODE_OF_CONDUCT.md) in all interactions. diff --git a/code/episode_6/advanced_pydantic/LICENSE b/code/episode_6/advanced_pydantic/LICENSE deleted file mode 100644 index f1386ccb..00000000 --- a/code/episode_6/advanced_pydantic/LICENSE +++ /dev/null @@ -1,21 +0,0 @@ -MIT License - -Copyright (c) 2024 ONRL - -Permission is hereby granted, free of charge, to any person obtaining a copy -of this software and associated documentation files (the "Software"), to deal -in the Software without restriction, including without limitation the rights -to use, copy, modify, merge, publish, distribute, sublicense, and/or sell -copies of the Software, and to permit persons to whom the Software is -furnished to do so, subject to the following conditions: - -The above copyright notice and this permission notice shall be included in all -copies or substantial portions of the Software. - -THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR -IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, -FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE -AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER -LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, -OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE -SOFTWARE. diff --git a/code/episode_6/advanced_pydantic/build_docs.sh b/code/episode_6/advanced_pydantic/build_docs.sh deleted file mode 100755 index 18cf838d..00000000 --- a/code/episode_6/advanced_pydantic/build_docs.sh +++ /dev/null @@ -1,2 +0,0 @@ -SPHINX_APIDOC_OPTIONS=members,show-inheritance poetry run sphinx-apidoc -o docs/source src -poetry run sphinx-build -M html docs docs/_build diff --git a/code/episode_6/advanced_pydantic/dockerfiles/Dockerfile b/code/episode_6/advanced_pydantic/dockerfiles/Dockerfile deleted file mode 100644 index 60ca2bbf..00000000 --- a/code/episode_6/advanced_pydantic/dockerfiles/Dockerfile +++ /dev/null @@ -1,35 +0,0 @@ -ARG SOURCE_IMAGE=source - -FROM --platform=amd64 regproxy.ornl.gov/hub_proxy/python:3.10-slim AS source - -# make sure image can run as non-root user -ENV POETRY_CACHE_DIR=/poetry/.cache -ENV POETRY_CONFIG_DIR=/poetry/.config -ENV POETRY_HOME=/poetry - -RUN pip install poetry -COPY . /src -WORKDIR /src - -RUN poetry install -RUN poetry build --format=wheel - -RUN chmod og+rwX -R /poetry -RUN chmod og+rwX -R /src - - -# This is a workaround that allows the COPY --from location to be defined as a build argument. -# With this, we can reference the built source image from Harbor in our pipelines, while still -# defaulting to using the previous stage for local builds. -FROM $SOURCE_IMAGE as source_image - - - -FROM --platform=amd64 regproxy.ornl.gov/hub_proxy/ubuntu:22.04 AS run - -RUN DEBIAN_FRONTEND="noninteractive" apt-get update && apt-get -y install tzdata -RUN apt-get install -y python3.10 curl -RUN curl -ksS https://bootstrap.pypa.io/get-pip.py | python3.10 - -COPY --from=source_image /src/dist /dist -RUN pip install /dist/*.whl diff --git a/code/episode_6/advanced_pydantic/poetry.lock b/code/episode_6/advanced_pydantic/poetry.lock deleted file mode 100644 index 7124d927..00000000 --- a/code/episode_6/advanced_pydantic/poetry.lock +++ /dev/null @@ -1,1314 +0,0 @@ -# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. - -[[package]] -name = "alabaster" -version = "1.0.0" -description = "A light, configurable Sphinx theme" -optional = false -python-versions = ">=3.10" -files = [ - {file = "alabaster-1.0.0-py3-none-any.whl", hash = "sha256:fc6786402dc3fcb2de3cabd5fe455a2db534b371124f1f21de8731783dec828b"}, - {file = "alabaster-1.0.0.tar.gz", hash = "sha256:c00dca57bca26fa62a6d7d0a9fcce65f3e026e9bfe33e9c538fd3fbb2144fd9e"}, -] - -[[package]] -name = "annotated-types" -version = "0.7.0" -description = "Reusable constraint types to use with typing.Annotated" -optional = false -python-versions = ">=3.8" -files = [ - {file = "annotated_types-0.7.0-py3-none-any.whl", hash = "sha256:1f02e8b43a8fbbc3f3e0d4f0f4bfc8131bcb4eebe8849b8e5c773f3a1c582a53"}, - {file = "annotated_types-0.7.0.tar.gz", hash = "sha256:aff07c09a53a08bc8cfccb9c85b05f1aa9a2a6f23728d790723543408344ce89"}, -] - -[[package]] -name = "babel" -version = "2.17.0" -description = "Internationalization utilities" -optional = false -python-versions = ">=3.8" -files = [ - {file = "babel-2.17.0-py3-none-any.whl", hash = "sha256:4d0b53093fdfb4b21c92b5213dba5a1b23885afa8383709427046b21c366e5f2"}, - {file = "babel-2.17.0.tar.gz", hash = "sha256:0c54cffb19f690cdcc52a3b50bcbf71e07a808d1c80d549f2459b9d2cf0afb9d"}, -] - -[package.extras] -dev = ["backports.zoneinfo", "freezegun (>=1.0,<2.0)", "jinja2 (>=3.0)", "pytest (>=6.0)", "pytest-cov", "pytz", "setuptools", "tzdata"] - -[[package]] -name = "certifi" -version = "2025.1.31" -description = "Python package for providing Mozilla's CA Bundle." -optional = false -python-versions = ">=3.6" -files = [ - {file = "certifi-2025.1.31-py3-none-any.whl", hash = "sha256:ca78db4565a652026a4db2bcdf68f2fb589ea80d0be70e03929ed730746b84fe"}, - {file = "certifi-2025.1.31.tar.gz", hash = "sha256:3d5da6925056f6f18f119200434a4780a94263f10d1c21d032a6f6b2baa20651"}, -] - -[[package]] -name = "cfgv" -version = "3.4.0" -description = "Validate configuration and produce human readable error messages." -optional = false -python-versions = ">=3.8" -files = [ - {file = "cfgv-3.4.0-py2.py3-none-any.whl", hash = "sha256:b7265b1f29fd3316bfcd2b330d63d024f2bfd8bcb8b0272f8e19a504856c48f9"}, - {file = "cfgv-3.4.0.tar.gz", hash = "sha256:e52591d4c5f5dead8e0f673fb16db7949d2cfb3f7da4582893288f0ded8fe560"}, -] - -[[package]] -name = "charset-normalizer" -version = "3.4.1" -description = "The Real First Universal Charset Detector. 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{ include = "advanced_pydantic", from = "src" } -] +[tool.pixi.workspace] +channels = ["conda-forge"] +platforms = ["linux-64", "osx-64"] + +[tool.pixi.environments] +default = {features = ["dev"], solve-group = "default"} +production = {features = [], solve-group = "default"} + +[tool.pixi.dependencies] + +[tool.pixi.pypi-dependencies] +advanced-pydantic = { path = ".", editable = true } +hatch = "*" +gitpython = ">=3.1.40,<4" +python-gitlab = ">=5.6.0,<6" +nova-trame = "*" +trame-datagrid = ">=0.2.2" + + +[tool.pixi.feature.dev.pypi-dependencies] +mypy = ">=1.10.0" +pre-commit = ">=2.20.0" +coverage = ">=6.4.3" +pytest = "*" +ruff = ">=0.6.2" +copier=">=9.3" +sphinx = "*" +sphinx-rtd-theme = "*" +sphinxcontrib-napoleon ="*" +tomli = "*" +[tool.pixi.tasks] +app = "python -m src.advanced_pydantic.app" +init-repo = "python -m scripts.git_utils" +deploy-production = "python -m scripts.xml_utils" +deploy-prototype = "python -m scripts.xml_utils_prototype" -[tool.poetry.dependencies] -python = "^3.10" [build-system] -requires = ["poetry-core"] -build-backend = "poetry.core.masonry.api" +requires = ["hatchling"] +build-backend = "hatchling.build" +[tool.hatch.build.targets.wheel] +packages = ["src/advanced_pydantic"] [tool.pytest.ini_options] testpaths = ["tests"] @@ -25,6 +58,7 @@ python_files = ["test*.py"] norecursedirs = [".git", "tmp*", "_tmp*", "__pycache__"] [tool.ruff] +extend-exclude = [".pixi"] line-length = 120 [tool.ruff.lint] @@ -49,8 +83,6 @@ ignore = [ [tool.ruff.lint.extend-per-file-ignores] '__init__.py' = ['D104'] # Missing docstring in public package - - [tool.ruff.lint.pydocstyle] convention = "numpy" @@ -70,19 +102,4 @@ omit = [ [tool.coverage.run] command_line = "-m pytest --junit-xml=reports/junit.xml" -data_file = "reports/.coverage" - -[tool.poetry.dev-dependencies] -mypy = ">=1.10.0" -pre-commit = ">=2.20.0" -coverage = ">=6.4.3" -pytest = "*" -ruff = ">=0.6.2" -copier=">=9.3" -sphinx = "*" -sphinx-rtd-theme = "*" -sphinxcontrib-napoleon ="*" -tomli = "*" - -[tool.poetry.scripts] -app = "advanced_pydantic:main" +data_file = "reports/.coverage" \ No newline at end of file diff --git a/code/episode_6/advanced_pydantic/scripts/.gitkeep b/code/episode_6/advanced_pydantic/scripts/.gitkeep deleted file mode 100644 index e69de29b..00000000 diff --git a/code/episode_6/advanced_pydantic/src/advanced_pydantic/__init__.py b/code/episode_6/advanced_pydantic/src/advanced_pydantic/__init__.py index 80dc44e2..e69de29b 100644 --- a/code/episode_6/advanced_pydantic/src/advanced_pydantic/__init__.py +++ b/code/episode_6/advanced_pydantic/src/advanced_pydantic/__init__.py @@ -1,8 +0,0 @@ -import importlib.metadata - -from .main import main -from .main_class import MainClass - -__all__ = ["MainClass", "main"] - -__version__ = importlib.metadata.version(__package__) diff --git a/code/episode_6/advanced_pydantic/src/advanced_pydantic/__main__.py b/code/episode_6/advanced_pydantic/src/advanced_pydantic/__main__.py deleted file mode 100644 index d87b5a1f..00000000 --- a/code/episode_6/advanced_pydantic/src/advanced_pydantic/__main__.py +++ /dev/null @@ -1,5 +0,0 @@ -"""Entry point for the Package.""" - -from . import main - -main() diff --git a/code/episode_6/advanced_pydantic/src/advanced_pydantic/main.py b/code/episode_6/advanced_pydantic/src/advanced_pydantic/main.py deleted file mode 100644 index 46ba84e8..00000000 --- a/code/episode_6/advanced_pydantic/src/advanced_pydantic/main.py +++ /dev/null @@ -1,52 +0,0 @@ -"""Main Application.""" - -from typing import List, Literal - -from pydantic import BaseModel, Field, ValidationError, field_validator, model_validator -from typing_extensions import Self - - -class Address(BaseModel): - """User Address model.""" - - street: str = Field(min_length=3, max_length=50) - city: str = Field(min_length=2, max_length=30) - zip_code: str = Field(pattern=r"^\d{5}$") # US ZIP code validation - type: Literal["home", "work"] = Field() - - -class User(BaseModel): - """User model.""" - - id: int = Field(default=1, gt=0) - name: str = Field(default="someName", min_length=1) - addresses: List[Address] = Field(min_length=1) - - @field_validator("id", mode="after") - @classmethod - def is_even(cls, value: int) -> int: - if value % 2 == 1: - raise ValueError(f"{value} is not an even number") - return value - - @model_validator(mode="after") - def check_name_for_even_id(self) -> Self: - if self.id % 2 == 0 and not self.name[0].isupper(): - raise ValueError("Name must start with a capital letter when the ID is even.") - - return self - - -def main() -> None: - # Example input - user_data = { - "id": 2, - "name": "alice", - "addresses": [{"street": "123 Main St", "city": "New York", "zip_code": "10001", "type": "home"}], - } - - try: - user = User.model_validate(user_data) - print(user) - except ValidationError as e: - print(e) diff --git a/code/episode_6/advanced_pydantic/src/advanced_pydantic/main_class.py b/code/episode_6/advanced_pydantic/src/advanced_pydantic/main_class.py deleted file mode 100644 index d870b1f5..00000000 --- a/code/episode_6/advanced_pydantic/src/advanced_pydantic/main_class.py +++ /dev/null @@ -1,23 +0,0 @@ -"""Main Class.""" - - -class MainClass: - """Main Class.""" - - def name(self, value: str) -> str: - """Example function with types documented in the docstring. - - Parameters - ---------- - value :str - The first parameter. - - Returns - ------- - str - The return value. Here just returns the function argument. - """ - return value - - -__all__ = ["MainClass"] diff --git a/code/episode_6/advanced_pydantic/tests/test_main_class.py b/code/episode_6/advanced_pydantic/tests/test_main_class.py deleted file mode 100644 index 1b3d3341..00000000 --- a/code/episode_6/advanced_pydantic/tests/test_main_class.py +++ /dev/null @@ -1,8 +0,0 @@ -"""Test package.""" - -from advanced_pydantic import MainClass - - -def test_version() -> None: - app = MainClass() - assert app.name("test") == "test" diff --git a/code/episode_6/pydantic_mvvm/.copier-answers.yml b/code/episode_6/pydantic_mvvm/.copier-answers.yml deleted file mode 100644 index 04cbfb12..00000000 --- a/code/episode_6/pydantic_mvvm/.copier-answers.yml +++ /dev/null @@ -1,11 +0,0 @@ -# Please do not edit or delete this file. It is needed to be able to update project from template. -_commit: '0.13' -_src_path: https://code.ornl.gov/ndip/project-templates/nova-application-template.git -framework: Trame -gui: true -multitabs: false -project_name: Trame With Pydantic -publish_docs: false -publish_to_pypi: false -python_package: trame-with-pydantic -use_mantid: false diff --git a/code/episode_6/pydantic_mvvm/.dockerignore b/code/episode_6/pydantic_mvvm/.dockerignore deleted file mode 100644 index 75e9bfa5..00000000 --- a/code/episode_6/pydantic_mvvm/.dockerignore +++ /dev/null @@ -1 +0,0 @@ -dockerfiles/Dockerfile diff --git a/code/episode_6/pydantic_mvvm/.gitignore b/code/episode_6/pydantic_mvvm/.gitignore deleted file mode 100644 index bb338b20..00000000 --- a/code/episode_6/pydantic_mvvm/.gitignore +++ /dev/null @@ -1,166 +0,0 @@ -# Byte-compiled / optimized / DLL files -__pycache__/ -*.py[cod] -*$py.class - -# C extensions -*.so - -# Distribution / packaging -.Python -build/ -develop-eggs/ -dist/ -downloads/ -eggs/ -.eggs/ -lib/ -lib64/ -parts/ -sdist/ -var/ -wheels/ -share/python-wheels/ -*.egg-info/ -.installed.cfg -*.egg -MANIFEST - -# PyInstaller -# Usually these files are written by a python script from a template -# before PyInstaller builds the exe, so as to inject date/other infos into it. -*.manifest -*.spec - -# Installer logs -pip-log.txt -pip-delete-this-directory.txt - -# Unit test / coverage reports -htmlcov/ -.tox/ -.nox/ -.coverage -.coverage.* -.cache -nosetests.xml -coverage.xml -*.cover -*.py,cover -.hypothesis/ -.pytest_cache/ -cover/ - -# Translations -*.mo -*.pot - -# Django stuff: -*.log -local_settings.py -db.sqlite3 -db.sqlite3-journal - -# Flask stuff: -instance/ -.webassets-cache - -# Scrapy stuff: -.scrapy - -# Sphinx documentation -docs/_build/ - -# PyBuilder -.pybuilder/ -target/ - -# Jupyter Notebook -.ipynb_checkpoints - -# IPython -profile_default/ -ipython_config.py - -# pyenv -# For a library or package, you might want to ignore these files since the code is -# intended to run in multiple environments; otherwise, check them in: -# .python-version - -# pipenv -# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control. -# However, in case of collaboration, if having platform-specific dependencies or dependencies -# having no cross-platform support, pipenv may install dependencies that don't work, or not -# install all needed dependencies. -#Pipfile.lock - -# poetry -# Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control. -# This is especially recommended for binary packages to ensure reproducibility, and is more -# commonly ignored for libraries. -# https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control -#poetry.lock - -# pdm -# Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control. -#pdm.lock -# pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it -# in version control. -# https://pdm.fming.dev/#use-with-ide -.pdm.toml - -# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm -__pypackages__/ - -# Celery stuff -celerybeat-schedule -celerybeat.pid - -# SageMath parsed files -*.sage.py - -# Environments -.env -.venv -env/ -venv/ -ENV/ -env.bak/ -venv.bak/ - -# Spyder project settings -.spyderproject -.spyproject - -# Rope project settings -.ropeproject - -# mkdocs documentation -/site - -# mypy -.mypy_cache/ -.dmypy.json -dmypy.json - -# Pyre type checker -.pyre/ - -# pytype static type analyzer -.pytype/ - -# Cython debug symbols -cython_debug/ - -# PyCharm -# We ingore the whole .idea folder -# For more fine tuning, JetBrains specific template is maintained in a separate JetBrains.gitignore that can -# be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore -# and can be added to the global gitignore or merged into this file. -.idea - - -.envrc - - -junit.xml diff --git a/code/episode_6/pydantic_mvvm/.gitlab-ci.yml b/code/episode_6/pydantic_mvvm/.gitlab-ci.yml deleted file mode 100644 index 67024b69..00000000 --- a/code/episode_6/pydantic_mvvm/.gitlab-ci.yml +++ /dev/null @@ -1,125 +0,0 @@ -workflow: - rules: - - if: $CI_COMMIT_TAG - when: never - - if: '$CI_PIPELINE_SOURCE == "merge_request_event"' - when: never - - when: always - -stages: - - lint - - test - - tag - - publish - -variables: - GIT_STRATEGY: clone - IMAGE_NAME: ${NDIP_DOCKER_REPOSITORY}/${CI_PROJECT_PATH} - -before_script: - - curl https://code.ornl.gov/rse-deployment/rse-sharables/raw/master/rse-bash-modules.sh -O - - source rse-bash-modules.sh - - func_rse_docker_cleanup - - docker login -u $NDIP_DOCKER_USER -p $NDIP_DOCKER_PASSWORD $NDIP_DOCKER_REPOSITORY - - export VERSION=$(cat pyproject.toml | grep "version =" | head -n 1 | awk '{ print $3 }' | tr -d '"') -after_script: - - curl https://code.ornl.gov/rse-deployment/rse-sharables/raw/master/rse-bash-modules.sh -O - - source rse-bash-modules.sh - - func_rse_docker_cleanup - -lint-check: - stage: lint - script: - - docker build -f dockerfiles/Dockerfile --target source -t image . - - docker run -u `id -u`:`id -g` image poetry run ruff check - - docker run -u `id -u`:`id -g` image poetry run ruff format --check - - docker run -u `id -u`:`id -g` image poetry run mypy . - - docker tag image ${IMAGE_NAME}:src-${CI_COMMIT_SHA} - - docker push ${IMAGE_NAME}:src-${CI_COMMIT_SHA} - tags: - - rse-multi-builder - -unit-tests: - stage: test - script: - - mkdir reports - - docker run -u `id -u`:`id -g` -v `pwd`/reports:/src/reports ${IMAGE_NAME}:src-${CI_COMMIT_SHA} poetry run coverage run - - docker run -u `id -u`:`id -g` -v `pwd`/reports:/src/reports ${IMAGE_NAME}:src-${CI_COMMIT_SHA} poetry run coverage report - - docker run -u `id -u`:`id -g` -v `pwd`/reports:/src/reports ${IMAGE_NAME}:src-${CI_COMMIT_SHA} poetry run coverage xml -o reports/coverage.xml - - sed -i "s:/src:${CI_BUILDS_DIR}/${CI_PROJECT_PATH}:" reports/coverage.xml - - coverage: '/TOTAL.*? (100(?:\.0+)?\%|[1-9]?\d(?:\.\d+)?\%)$/' - artifacts: - when: always - reports: - junit: reports/junit.xml - coverage_report: - coverage_format: cobertura - path: reports/coverage.xml - tags: - - rse-multi-builder - -docs-test: - stage: test - script: - - docker run -u `id -u`:`id -g` ${IMAGE_NAME}:src-${CI_COMMIT_SHA} bash build_docs.sh - tags: - - rse-multi-builder - - -tag-release: - stage: tag - rules: - - if: $CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH - when: always - - when: never - script: - - git config user.email "$GITLAB_USER_EMAIL" - - git config user.name "$GITLAB_USER_NAME" - - > - if [ -z $(git ls-remote --tags origin "$VERSION") ]; then - git remote add gitlab https://oauth2:${NDIP_GROUP_TOKEN}@${CI_SERVER_HOST}/${CI_PROJECT_PATH}.git - git tag ${VERSION} - git push gitlab --tags - fi - tags: - - rse-multi-builder - - -build-image: - stage: publish - variables: - OVERWRITE_IMAGE: "false" - when: manual - script: - - IMAGE_TAG=${VERSION} - - docker build -f dockerfiles/Dockerfile -t image --target run --build-arg SOURCE_IMAGE=${IMAGE_NAME}:src-${CI_COMMIT_SHA} . - - docker tag image ${IMAGE_NAME}:bin-${CI_COMMIT_SHA} - - docker push ${IMAGE_NAME}:bin-${CI_COMMIT_SHA} - - docker tag image ${IMAGE_NAME}:latest - - docker push ${IMAGE_NAME}:latest - - > - if ! docker pull ${IMAGE_NAME}:${IMAGE_TAG} || [ "$OVERWRITE_IMAGE" == "true" ]; then - docker tag image ${IMAGE_NAME}:${IMAGE_TAG} - docker push ${IMAGE_NAME}:${IMAGE_TAG} - else - echo tag ${IMAGE_TAG} already exists in ${NDIP_DOCKER_REPOSITORY}. Use OVERWRITE_IMAGE="true", delete image in the repository or change the tag - exit 1 - fi - tags: - - rse-multi-builder - -package-build: - stage: publish - script: - - > - docker run - -u `id -u`:`id -g` - ${IMAGE_NAME}:src-${CI_COMMIT_SHA} - bash -c " - poetry config repositories.gitlab_repo ${CI_API_V4_URL}/projects/${CI_PROJECT_ID}/packages/pypi && - poetry publish -u gitlab-ci-token -p ${CI_JOB_TOKEN} -r gitlab_repo - " - when: manual - tags: - - rse-multi-builder diff --git a/code/episode_6/pydantic_mvvm/.pre-commit-config.yaml b/code/episode_6/pydantic_mvvm/.pre-commit-config.yaml deleted file mode 100644 index 302be768..00000000 --- a/code/episode_6/pydantic_mvvm/.pre-commit-config.yaml +++ /dev/null @@ -1,27 +0,0 @@ -repos: -- repo: https://github.com/pre-commit/pre-commit-hooks - rev: v4.6.0 - hooks: - - id: check-added-large-files - args: [--maxkb=8192] - - id: check-merge-conflict - - id: check-yaml - args: [--allow-multiple-documents] - - id: end-of-file-fixer - - id: check-toml - - id: trailing-whitespace -- repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.6.2 - hooks: - - id: ruff - args: [--fix, --exit-non-zero-on-fix] - - id: ruff-format -- repo: local - hooks: - - id: mypy - name: mypy - entry: poetry run mypy . - language: system - types: [python] - verbose: true - pass_filenames: false diff --git a/code/episode_6/pydantic_mvvm/.vscode/extensions.json b/code/episode_6/pydantic_mvvm/.vscode/extensions.json deleted file mode 100644 index 18a8fa1e..00000000 --- a/code/episode_6/pydantic_mvvm/.vscode/extensions.json +++ /dev/null @@ -1,6 +0,0 @@ -{ - "recommendations": [ - "charliermarsh.ruff", - "ms-python.mypy-type-checker" - ] -} diff --git a/code/episode_6/pydantic_mvvm/.vscode/launch.json b/code/episode_6/pydantic_mvvm/.vscode/launch.json deleted file mode 100644 index 3041f4a5..00000000 --- a/code/episode_6/pydantic_mvvm/.vscode/launch.json +++ /dev/null @@ -1,10 +0,0 @@ -{ - "configurations": [{ - "name": "Launch", - "type": "debugpy", - "request": "launch", - "cwd": "${workspaceFolder}", - "module": "trame_with_pydantic", - "args": [] - }] -} diff --git a/code/episode_6/pydantic_mvvm/.vscode/settings.json b/code/episode_6/pydantic_mvvm/.vscode/settings.json deleted file mode 100644 index 8700fea6..00000000 --- a/code/episode_6/pydantic_mvvm/.vscode/settings.json +++ /dev/null @@ -1,10 +0,0 @@ -{ - "[python]": { - "editor.defaultFormatter": "charliermarsh.ruff" - }, - "python.testing.pytestArgs": [ - "tests" - ], - "python.testing.unittestEnabled": false, - "python.testing.pytestEnabled": true -} diff --git a/code/episode_6/pydantic_mvvm/CODE_OF_CONDUCT.md b/code/episode_6/pydantic_mvvm/CODE_OF_CONDUCT.md deleted file mode 100644 index 4db92857..00000000 --- a/code/episode_6/pydantic_mvvm/CODE_OF_CONDUCT.md +++ /dev/null @@ -1,128 +0,0 @@ -# Contributor Covenant Code of Conduct - -## Our Pledge - -We as members, contributors, and leaders pledge to make participation in our -community a harassment-free experience for everyone, regardless of age, body -size, visible or invisible disability, ethnicity, sex characteristics, gender -identity and expression, level of experience, education, socioeconomic status, -nationality, personal appearance, race, religion, or sexual identity -and orientation. - -We pledge to act and interact in ways that contribute to an open, welcoming, -diverse, inclusive, and healthy community. - -## Our Standards - -Examples of behavior that contributes to a positive environment for our -community include: - -* Demonstrating empathy and kindness toward other people -* Being respectful of differing opinions, viewpoints, and experiences -* Giving and gracefully accepting constructive feedback -* Accepting responsibility and apologizing to those affected by our mistakes, - and learning from the experience -* Focusing on what is best not just for us as individuals, but for the - overall community - -Examples of unacceptable behavior include: - -* The use of sexualized language or imagery, and sexual attention or - advances of any kind -* Trolling, insulting or derogatory comments, and personal or political attacks -* Public or private harassment -* Publishing others' private information, such as a physical or email - address, without their explicit permission -* Other conduct which could reasonably be considered inappropriate in a - professional setting - -## Enforcement Responsibilities - -Community leaders are responsible for clarifying and enforcing our standards of -acceptable behavior and will take appropriate and fair corrective action in -response to any behavior that they deem inappropriate, threatening, offensive, -or harmful. - -Community leaders have the right and responsibility to remove, edit, or reject -comments, commits, code, wiki edits, issues, and other contributions that are -not aligned to this Code of Conduct, and will communicate reasons for moderation -decisions when appropriate. - -## Scope - -This Code of Conduct applies within all community spaces, and also applies when -an individual is officially representing the community in public spaces. -Examples of representing our community include using an official e-mail address, -posting via an official social media account, or acting as an appointed -representative at an online or offline event. - -## Enforcement - -Instances of abusive, harassing, or otherwise unacceptable behavior may be -reported to the community leaders responsible for enforcement at -watsongr@ornl.gov. -All complaints will be reviewed and investigated promptly and fairly. - -All community leaders are obligated to respect the privacy and security of the -reporter of any incident. - -## Enforcement Guidelines - -Community leaders will follow these Community Impact Guidelines in determining -the consequences for any action they deem in violation of this Code of Conduct: - -### 1. Correction - -**Community Impact**: Use of inappropriate language or other behavior deemed -unprofessional or unwelcome in the community. - -**Consequence**: A private, written warning from community leaders, providing -clarity around the nature of the violation and an explanation of why the -behavior was inappropriate. A public apology may be requested. - -### 2. Warning - -**Community Impact**: A violation through a single incident or series -of actions. - -**Consequence**: A warning with consequences for continued behavior. No -interaction with the people involved, including unsolicited interaction with -those enforcing the Code of Conduct, for a specified period of time. This -includes avoiding interactions in community spaces as well as external channels -like social media. Violating these terms may lead to a temporary or -permanent ban. - -### 3. Temporary Ban - -**Community Impact**: A serious violation of community standards, including -sustained inappropriate behavior. - -**Consequence**: A temporary ban from any sort of interaction or public -communication with the community for a specified period of time. No public or -private interaction with the people involved, including unsolicited interaction -with those enforcing the Code of Conduct, is allowed during this period. -Violating these terms may lead to a permanent ban. - -### 4. Permanent Ban - -**Community Impact**: Demonstrating a pattern of violation of community -standards, including sustained inappropriate behavior, harassment of an -individual, or aggression toward or disparagement of classes of individuals. - -**Consequence**: A permanent ban from any sort of public interaction within -the community. - -## Attribution - -This Code of Conduct is adapted from the [Contributor Covenant][homepage], -version 2.0, available at -https://www.contributor-covenant.org/version/2/0/code_of_conduct.html. - -Community Impact Guidelines were inspired by [Mozilla's code of conduct -enforcement ladder](https://github.com/mozilla/diversity). - -[homepage]: https://www.contributor-covenant.org - -For answers to common questions about this code of conduct, see the FAQ at -https://www.contributor-covenant.org/faq. Translations are available at -https://www.contributor-covenant.org/translations. diff --git a/code/episode_6/pydantic_mvvm/CONTRIBUTING.md b/code/episode_6/pydantic_mvvm/CONTRIBUTING.md deleted file mode 100644 index 609d3a93..00000000 --- a/code/episode_6/pydantic_mvvm/CONTRIBUTING.md +++ /dev/null @@ -1,41 +0,0 @@ -# Contributing to Trame With Pydantic - -Thank you for considering contributing to Trame With Pydantic! -This document provides guidelines to help you contribute effectively and ensure a smooth process for everyone involved. - -## Getting Started - -To start contributing to this project, you will need an ORNL's GitLab account. -If you are unfamiliar with GitLab or version control, -consider reviewing GitLab's [Documentation](https://docs.gitlab.com/). - -## How to Contribute - -### Reporting Bugs - -If you find a bug in the project, please open an issue on GitLab with a clear and concise description. Make sure to include: - -- Steps to reproduce the bug. -- Expected behavior. -- Actual behavior. -- Any relevant screenshots, logs, or stack traces. - -### Suggesting Features - -We welcome feature suggestions! To propose a new feature: - -1. Open an issue on GitLab with the title "Feature Request: [Feature Name]". -2. Provide a detailed description of the proposed feature. -3. Explain why this feature would be useful for the project. -4. Include any relevant examples or mockups. - -### Submitting Changes - -If you'd like to contribute code changes, please follow the following guidelines: - -- [Working on a feature](https://calvera.ornl.gov/docs/dev/project_management/gitlab/single-repo/) -- [Style guidelines](https://calvera.ornl.gov/docs/dev/project_management/style_guidelines/) - -## Code of Conduct - -Please adhere to the project's [Code of Conduct](CODE_OF_CONDUCT.md) in all interactions. diff --git a/code/episode_6/pydantic_mvvm/LICENSE b/code/episode_6/pydantic_mvvm/LICENSE deleted file mode 100644 index f1386ccb..00000000 --- a/code/episode_6/pydantic_mvvm/LICENSE +++ /dev/null @@ -1,21 +0,0 @@ -MIT License - -Copyright (c) 2024 ONRL - -Permission is hereby granted, free of charge, to any person obtaining a copy -of this software and associated documentation files (the "Software"), to deal -in the Software without restriction, including without limitation the rights -to use, copy, modify, merge, publish, distribute, sublicense, and/or sell -copies of the Software, and to permit persons to whom the Software is -furnished to do so, subject to the following conditions: - -The above copyright notice and this permission notice shall be included in all -copies or substantial portions of the Software. - -THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR -IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, -FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE -AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER -LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, -OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE -SOFTWARE. diff --git a/code/episode_6/pydantic_mvvm/build_docs.sh b/code/episode_6/pydantic_mvvm/build_docs.sh deleted file mode 100755 index 18cf838d..00000000 --- a/code/episode_6/pydantic_mvvm/build_docs.sh +++ /dev/null @@ -1,2 +0,0 @@ -SPHINX_APIDOC_OPTIONS=members,show-inheritance poetry run sphinx-apidoc -o docs/source src -poetry run sphinx-build -M html docs docs/_build diff --git a/code/episode_6/pydantic_mvvm/dockerfiles/Dockerfile b/code/episode_6/pydantic_mvvm/dockerfiles/Dockerfile deleted file mode 100644 index 60ca2bbf..00000000 --- a/code/episode_6/pydantic_mvvm/dockerfiles/Dockerfile +++ /dev/null @@ -1,35 +0,0 @@ -ARG SOURCE_IMAGE=source - -FROM --platform=amd64 regproxy.ornl.gov/hub_proxy/python:3.10-slim AS source - 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{file = "yarl-1.18.3.tar.gz", hash = "sha256:ac1801c45cbf77b6c99242eeff4fffb5e4e73a800b5c4ad4fc0be5def634d2e1"}, -] - -[package.dependencies] -idna = ">=2.0" -multidict = ">=4.0" -propcache = ">=0.2.0" - -[metadata] -lock-version = "2.0" -python-versions = "^3.10" -content-hash = "1131a1a151f36bbe11b4fc723d87b3b6ff1d523b617c477bea8ff7b11b8c9997" diff --git a/code/episode_6/pydantic_mvvm/pyproject.toml b/code/episode_6/pydantic_mvvm/pyproject.toml index b66d4e9f..845d9f62 100644 --- a/code/episode_6/pydantic_mvvm/pyproject.toml +++ b/code/episode_6/pydantic_mvvm/pyproject.toml @@ -1,24 +1,56 @@ -[tool.poetry] +[project] name = "trame-with-pydantic" version = "0.1.0" -description = "Trame With Pydantic Project" +description = "Trame with Pydantic Project" authors = [] readme = "README.md" license = "MIT" keywords = ["NDIP", "NOVA", "python"] +requires-python = ">=3.10,<3.14" -packages = [ - { include = "trame_with_pydantic", from = "src" } -] +[tool.pixi.workspace] +channels = ["conda-forge"] +platforms = ["linux-64", "osx-64"] + +[tool.pixi.environments] +default = {features = ["dev"], solve-group = "default"} +production = {features = [], solve-group = "default"} +[tool.pixi.dependencies] -[tool.poetry.dependencies] -python = "^3.10" +[tool.pixi.pypi-dependencies] +trame-with-pydantic = { path = ".", editable = true } +hatch = "*" +gitpython = ">=3.1.40,<4" +python-gitlab = ">=5.6.0,<6" nova-trame = "*" +trame-datagrid = ">=0.2.2" + + +[tool.pixi.feature.dev.pypi-dependencies] +mypy = ">=1.10.0" +pre-commit = ">=2.20.0" +coverage = ">=6.4.3" +pytest = "*" +ruff = ">=0.6.2" +copier=">=9.3" +sphinx = "*" +sphinx-rtd-theme = "*" +sphinxcontrib-napoleon ="*" +tomli = "*" + +[tool.pixi.tasks] +app = "python -m src.trame_with_pydantic.app" +init-repo = "python -m scripts.git_utils" +deploy-production = "python -m scripts.xml_utils" +deploy-prototype = "python -m scripts.xml_utils_prototype" + [build-system] -requires = ["poetry-core"] -build-backend = "poetry.core.masonry.api" +requires = ["hatchling"] +build-backend = "hatchling.build" +[tool.hatch.build.targets.wheel] +packages = ["src/trame_with_pydantic"] [tool.pytest.ini_options] testpaths = ["tests"] @@ -26,6 +58,7 @@ python_files = ["test*.py"] norecursedirs = [".git", "tmp*", "_tmp*", "__pycache__"] [tool.ruff] +extend-exclude = [".pixi"] line-length = 120 [tool.ruff.lint] @@ -50,8 +83,6 @@ ignore = [ [tool.ruff.lint.extend-per-file-ignores] '__init__.py' = ['D104'] # Missing docstring in public package - - [tool.ruff.lint.pydocstyle] convention = "numpy" @@ -71,19 +102,4 @@ omit = [ [tool.coverage.run] command_line = "-m pytest --junit-xml=reports/junit.xml" -data_file = "reports/.coverage" - -[tool.poetry.dev-dependencies] -mypy = ">=1.10.0" -pre-commit = ">=2.20.0" -coverage = ">=6.4.3" -pytest = "*" -ruff = ">=0.6.2" -copier=">=9.3" -sphinx = "*" -sphinx-rtd-theme = "*" -sphinxcontrib-napoleon ="*" -tomli = "*" - -[tool.poetry.scripts] -app = "trame_with_pydantic.app:main" +data_file = "reports/.coverage" \ No newline at end of file diff --git a/code/episode_6/pydantic_mvvm/scripts/.gitkeep b/code/episode_6/pydantic_mvvm/scripts/.gitkeep deleted file mode 100644 index e69de29b..00000000 diff --git a/code/episode_6/pydantic_mvvm/src/trame_with_pydantic/app/main.py b/code/episode_6/pydantic_mvvm/src/trame_with_pydantic/app/main.py index 2977dbe1..68cf8a37 100644 --- a/code/episode_6/pydantic_mvvm/src/trame_with_pydantic/app/main.py +++ b/code/episode_6/pydantic_mvvm/src/trame_with_pydantic/app/main.py @@ -5,7 +5,7 @@ def main() -> None: kwargs = {} - from .views.main import MainApp + from .views.main_view import MainApp app = MainApp() for arg in sys.argv[2:]: diff --git a/code/episode_6/pydantic_mvvm/src/trame_with_pydantic/app/models/settings.py b/code/episode_6/pydantic_mvvm/src/trame_with_pydantic/app/models/settings.py index 7af46e4c..7b230075 100644 --- a/code/episode_6/pydantic_mvvm/src/trame_with_pydantic/app/models/settings.py +++ b/code/episode_6/pydantic_mvvm/src/trame_with_pydantic/app/models/settings.py @@ -1,6 +1,7 @@ from pydantic import BaseModel, Field -class SettingsModel(BaseModel): - """Settings model.""" - port: int = Field(default=8080, gt=0, lt=65536, title="Port Number", description="The port to listen on.", examples=["12345"]) +class SettingsModel(BaseModel): + port: int = Field( + default=8080, gt=0, lt=65536, title="Port Number", description="The port to listen on.", examples=["12345"] + ) diff --git a/code/episode_6/pydantic_mvvm/src/trame_with_pydantic/app/mvvm_factory.py b/code/episode_6/pydantic_mvvm/src/trame_with_pydantic/app/mvvm_factory.py index d7cf5f4b..c11e5916 100644 --- a/code/episode_6/pydantic_mvvm/src/trame_with_pydantic/app/mvvm_factory.py +++ b/code/episode_6/pydantic_mvvm/src/trame_with_pydantic/app/mvvm_factory.py @@ -3,7 +3,7 @@ from nova.mvvm.interface import BindingInterface from .models.main_model import MainModel -from .view_models.main import MainViewModel +from .view_models.main_view_model import MainViewModel def create_viewmodels(binding: BindingInterface) -> dict: diff --git a/code/episode_6/pydantic_mvvm/src/trame_with_pydantic/app/view_models/main.py b/code/episode_6/pydantic_mvvm/src/trame_with_pydantic/app/view_models/main.py deleted file mode 100644 index dfcba7ae..00000000 --- a/code/episode_6/pydantic_mvvm/src/trame_with_pydantic/app/view_models/main.py +++ /dev/null @@ -1,24 +0,0 @@ -"""Module for the main ViewModel.""" - -from typing import Any, Dict - -from nova.mvvm.interface import BindingInterface - -from ..models.settings import SettingsModel - - -class MainViewModel: - """Viewmodel class, used to create data<->view binding and react on changes from GUI.""" - - def __init__(self, _, binding: BindingInterface): - self.settings = SettingsModel() - self.settings_bind = binding.new_bind(self.settings, callback_after_update=self.process_settings_change) - - def process_settings_change(self, results: Dict[str, Any]) -> None: - if results["error"]: - print(f"error in fields {results['errored']}, model not changed") - else: - print(f"model fields updated: {results['updated']}") - - def update_view(self) -> None: - self.settings_bind.update_in_view(self.settings) diff --git a/code/episode_6/pydantic_mvvm/src/trame_with_pydantic/app/views/main.py b/code/episode_6/pydantic_mvvm/src/trame_with_pydantic/app/views/main.py deleted file mode 100644 index 65f5b0b2..00000000 --- a/code/episode_6/pydantic_mvvm/src/trame_with_pydantic/app/views/main.py +++ /dev/null @@ -1,43 +0,0 @@ -"""Main file.""" - -import logging - -from nova.mvvm.trame_binding import TrameBinding -from nova.trame import ThemedApp -from trame.app import get_server -from nova.trame.view.components import InputField -from trame.widgets import vuetify3 as vuetify - -from ..mvvm_factory import create_viewmodels -from ..view_models.main import MainViewModel - -logger = logging.getLogger(__name__) -logger.setLevel(logging.INFO) - - -class MainApp(ThemedApp): - """Main application view class. Renders all UI elements on the mainn page.""" - - def __init__(self) -> None: - super().__init__() - self.server = get_server(None, client_type="vue3") - binding = TrameBinding(self.server.state) - self.server.state.trame__title = "Trame With Pydantic" - self.view_models = create_viewmodels(binding) - self.view_model: MainViewModel = self.view_models["main"] - self.view_model.settings_bind.connect("settings") - self.create_ui() - - def create_ui(self) -> None: - self.state.trame__title = "Trame With Pydantic" - - with super().create_ui() as layout: - layout.toolbar_title.set_text("Trame With Pydantic") - with layout.pre_content: - pass - with layout.content: - with vuetify.VRow(align="center", classes="mt-4"): - InputField(v_model="settings.port") - with layout.post_content: - pass - return layout diff --git a/code/episode_6/pydantic_mvvm/tests/test_app.py b/code/episode_6/pydantic_mvvm/tests/test_app.py deleted file mode 100644 index 78d760c2..00000000 --- a/code/episode_6/pydantic_mvvm/tests/test_app.py +++ /dev/null @@ -1,8 +0,0 @@ -"""Test package for application.""" - -from trame_with_pydantic.app.views.main import MainApp - - -def test_app() -> None: - app = MainApp() - assert app diff --git a/code/episode_6/pydantic_mvvm/tests/test_model.py b/code/episode_6/pydantic_mvvm/tests/test_model.py deleted file mode 100644 index 6a511da9..00000000 --- a/code/episode_6/pydantic_mvvm/tests/test_model.py +++ /dev/null @@ -1,9 +0,0 @@ -"""Test package for model classes.""" - -from trame_with_pydantic.app.models.main_model import MainModel - - -def test_main_model_defaults() -> None: - model = MainModel() - assert model.username == "test_name" - assert model.password == "test_password" diff --git a/code/episode_7/poetry.lock b/code/episode_7/poetry.lock deleted file mode 100755 index 1deb2d26..00000000 --- a/code/episode_7/poetry.lock +++ /dev/null @@ -1,3311 +0,0 @@ -# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. - -[[package]] -name = "aiohappyeyeballs" -version = "2.6.1" -description = "Happy Eyeballs for asyncio" -optional = false -python-versions = ">=3.9" -files = [ - 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{ include = "nova_tutorial", from = "src" } -] +[tool.pixi.workspace] +channels = ["conda-forge"] +platforms = ["linux-64", "osx-64"] + +[tool.pixi.environments] +default = {features = ["dev"], solve-group = "default"} +production = {features = [], solve-group = "default"} + +[tool.pixi.dependencies] + +[tool.pixi.pypi-dependencies] +viz-examples = { path = ".", editable = true } +hatch = "*" +gitpython = ">=3.1.40,<4" +python-gitlab = ">=5.6.0,<6" +nova-trame = "*" +trame-datagrid = ">=0.2.2" -[tool.poetry.dependencies] -python = "^3.10" -nova-galaxy = "^0.7.0" -nova-mvvm = "0.9.0" -nova-trame = "0.16.0" -pandas = "^2.2.3" -plotly = "^5.24.1" -pyvista = "^0.44.2" -trame-plotly = "^3.0.2" -trame-vtk = "^2.8.14" +[tool.pixi.feature.dev.pypi-dependencies] +mypy = ">=1.10.0" +pre-commit = ">=2.20.0" +coverage = ">=6.4.3" +pytest = "*" +ruff = ">=0.6.2" +copier=">=9.3" +sphinx = "*" +sphinx-rtd-theme = "*" +sphinxcontrib-napoleon ="*" +tomli = "*" + +[tool.pixi.tasks] +app = "python -m src.viz_examples.app" +init-repo = "python -m scripts.git_utils" +deploy-production = "python -m scripts.xml_utils" +deploy-prototype = "python -m scripts.xml_utils_prototype" [build-system] -requires = ["poetry-core"] -build-backend = "poetry.core.masonry.api" +requires = ["hatchling"] +build-backend = "hatchling.build" +[tool.hatch.build.targets.wheel] +packages = ["src/viz_examples"] [tool.pytest.ini_options] testpaths = ["tests"] @@ -34,6 +59,7 @@ python_files = ["test*.py"] norecursedirs = [".git", "tmp*", "_tmp*", "__pycache__"] [tool.ruff] +extend-exclude = [".pixi"] line-length = 120 [tool.ruff.lint] @@ -58,8 +84,6 @@ ignore = [ [tool.ruff.lint.extend-per-file-ignores] '__init__.py' = ['D104'] # Missing docstring in public package - - [tool.ruff.lint.pydocstyle] convention = "numpy" @@ -80,18 +104,3 @@ omit = [ [tool.coverage.run] command_line = "-m pytest --junit-xml=reports/junit.xml" data_file = "reports/.coverage" - -[tool.poetry.dev-dependencies] -mypy = ">=1.10.0" -pre-commit = ">=2.20.0" -coverage = ">=6.4.3" -pytest = "*" -ruff = ">=0.6.2" -copier=">=9.3" -sphinx = "*" -sphinx-rtd-theme = "*" -sphinxcontrib-napoleon ="*" -tomli = "*" - -[tool.poetry.scripts] -app = "nova_tutorial:main" diff --git a/code/episode_7/src/nova_tutorial/__init__.py b/code/episode_7/src/nova_tutorial/__init__.py deleted file mode 100755 index 1a91a49b..00000000 --- a/code/episode_7/src/nova_tutorial/__init__.py +++ /dev/null @@ -1,7 +0,0 @@ -import importlib.metadata - -from .main import main - -__all__ = ["main"] - -__version__ = importlib.metadata.version(__package__) diff --git a/code/episode_7/src/nova_tutorial/__main__.py b/code/episode_7/src/nova_tutorial/__main__.py deleted file mode 100755 index d87b5a1f..00000000 --- a/code/episode_7/src/nova_tutorial/__main__.py +++ /dev/null @@ -1,5 +0,0 @@ -"""Entry point for the Package.""" - -from . import main - -main() diff --git a/code/episode_7/src/nova_tutorial/main.py b/code/episode_7/src/nova_tutorial/main.py deleted file mode 100755 index f9376e77..00000000 --- a/code/episode_7/src/nova_tutorial/main.py +++ /dev/null @@ -1,12 +0,0 @@ -"""Loads the main view and starts the Trame server.""" - -from nova_tutorial.views.main import MainApp - - -def main() -> None: - app = MainApp() - app.server.start() - - -if __name__ == "__main__": - main() diff --git a/code/episode_7/src/nova_tutorial/models/main_model.py b/code/episode_7/src/nova_tutorial/models/main_model.py deleted file mode 100644 index 917d32c1..00000000 --- a/code/episode_7/src/nova_tutorial/models/main_model.py +++ /dev/null @@ -1,23 +0,0 @@ -"""Module for the main model.""" - -from pydantic import BaseModel, Field - - -class MainModel(BaseModel): - """ - A model class. - - This class uses Pydantic (https://docs.pydantic.dev/latest/), - which allows for defining data validation rules, - titles, descriptions, and examples that can be used in GUI elements or - other interfaces for improved clarity and usability. - """ - - username: str = Field( - default="test_name", - min_length=1, - title="User Name", - description="Please provide the name of the user", - examples=["user"], - ) - password: str = Field(default="test_password", title="User Password") diff --git a/code/episode_7/src/nova_tutorial/models/plotly.py b/code/episode_7/src/nova_tutorial/models/plotly.py deleted file mode 100755 index 8fe95da5..00000000 --- a/code/episode_7/src/nova_tutorial/models/plotly.py +++ /dev/null @@ -1,58 +0,0 @@ -"""Configuration for the Plotly example.""" - -from enum import Enum - -import plotly.graph_objects as go -from plotly.data import iris -from pydantic import BaseModel, Field, computed_field - -IRIS_DATA = iris() - -class AxisOptions(str, Enum): - sepal_length = "sepal_length" - sepal_width = "sepal_width" - petal_length = "petal_length" - petal_width = "petal_width" - - -class PlotTypeOptions(str, Enum): - heatmap = "Heatmap" - scatter = "Scatterplot" - - -class PlotlyConfig(BaseModel): - """Configuration class for the Plotly example.""" - - x_axis: AxisOptions = Field(default=AxisOptions.sepal_length, title="X Axis") - y_axis: AxisOptions = Field(default=AxisOptions.sepal_width, title="Y Axis") - z_axis: AxisOptions = Field(default=AxisOptions.petal_length, title="Color") - plot_type: PlotTypeOptions = Field(default=PlotTypeOptions.scatter, title="Plot Type") - - @computed_field # type: ignore - @property - def is_not_heatmap(self) -> bool: - return self.plot_type != PlotTypeOptions.heatmap - - def get_figure(self) -> go.Figure: - match self.plot_type: - case PlotTypeOptions.heatmap: - plot_data = go.Heatmap( - x=IRIS_DATA[self.x_axis].tolist(), - y=IRIS_DATA[self.y_axis].tolist(), - z=IRIS_DATA[self.z_axis].tolist(), - ) - case PlotTypeOptions.scatter: - plot_data = go.Scatter( - x=IRIS_DATA[self.x_axis].tolist(), y=IRIS_DATA[self.y_axis].tolist(), mode="markers" - ) - case _: - raise ValueError(f"Invalid plot type: {self.plot_type}") - - figure = go.Figure(plot_data) - figure.update_layout( - title={"text": f"{self.plot_type}"}, - xaxis={"title": {"text": self.x_axis}}, - yaxis={"title": {"text": self.y_axis}}, - ) - - return figure diff --git a/code/episode_7/src/nova_tutorial/models/pyvista.py b/code/episode_7/src/nova_tutorial/models/pyvista.py deleted file mode 100644 index 45365da9..00000000 --- a/code/episode_7/src/nova_tutorial/models/pyvista.py +++ /dev/null @@ -1,36 +0,0 @@ -"""Configuration for the PyVista example.""" - -from enum import Enum - -from pydantic import BaseModel, Field -from pyvista import Plotter, examples - -KNEE_DATA = examples.download_knee_full() - -class ColormapOptions(str, Enum): - viridis = "viridis" - autumn = "autumn" - coolwarm = "coolwarm" - twilight = "twilight" - jet = "jet" - - -class OpacityOptions(str, Enum): - linear = "linear" - sigmoid = "sigmoid" - - -class PyVistaConfig(BaseModel): - """Configuration class for the PyVista example.""" - - colormap: ColormapOptions = Field(default=ColormapOptions.viridis, title="Color Transfer Function") - opacity: OpacityOptions = Field(default=OpacityOptions.linear, title="Opacity Transfer Function") - - def render(self, plotter: Plotter) -> None: - # If re-rendering the volume on changes isn't acceptable, then you may need to switch to using VTK directly due - # limitations of the PyVista volume rendering engine. - plotter.clear() - plotter.add_volume(KNEE_DATA, cmap=self.colormap, opacity=self.opacity, show_scalar_bar=False) - - plotter.render() - plotter.view_isometric() diff --git a/code/episode_7/src/nova_tutorial/models/vtk.py b/code/episode_7/src/nova_tutorial/models/vtk.py deleted file mode 100644 index c2b4bf04..00000000 --- a/code/episode_7/src/nova_tutorial/models/vtk.py +++ /dev/null @@ -1,114 +0,0 @@ -"""Configuration for the VTK example.""" - -import numpy as np -from pyvista import examples -from vtk import vtkSLCReader -from vtkmodules.vtkCommonDataModel import vtkPiecewiseFunction -from vtkmodules.vtkRenderingCore import vtkColorTransferFunction, vtkVolume, vtkVolumeProperty -from vtkmodules.vtkRenderingVolume import vtkFixedPointVolumeRayCastMapper - -KNEE_DATA = examples.download_knee_full() -KNEE_DATAFILE = examples.download_knee_full(load=False) - - -class VTKConfig: - """Configuration class for the VTK example.""" - - max: float = KNEE_DATA.get_data_range()[1] - min: float = KNEE_DATA.get_data_range()[0] - - def __init__(self) -> None: - reader = vtkSLCReader() - reader.SetFileName(KNEE_DATAFILE) - - mapper = vtkFixedPointVolumeRayCastMapper() - mapper.SetInputConnection(reader.GetOutputPort()) - - lut = self.init_lut() - pwf = self.init_pwf() - volume_props = vtkVolumeProperty() - volume_props.SetColor(lut) - volume_props.SetScalarOpacity(pwf) - volume_props.SetShade(0) - volume_props.SetInterpolationTypeToLinear() - - self.volume = vtkVolume() - self.volume.SetMapper(mapper) - self.volume.SetProperty(volume_props) - self.volume.SetVisibility(1) - - def get_volume(self) -> vtkVolume: - return self.volume - - def init_lut(self) -> vtkColorTransferFunction: - # This method defines the "Fast" colormap. - # See https://www.kitware.com/new-default-colormap-and-background-in-next-paraview-release/ - - lut = vtkColorTransferFunction() - - lut.SetColorSpaceToRGB() - lut.SetNanColor([0.0, 1.0, 0.0]) - - srgb = np.array( - [ - 0, - 0.05639999999999999, - 0.05639999999999999, - 0.47, - 0.17159223942480895, - 0.24300000000000013, - 0.4603500000000004, - 0.81, - 0.2984914818394138, - 0.3568143826543521, - 0.7450246485363142, - 0.954367702893722, - 0.4321287371255907, - 0.6882, - 0.93, - 0.9179099999999999, - 0.5, - 0.8994959551205902, - 0.944646394975174, - 0.7686567142818399, - 0.5882260353170073, - 0.957107977357604, - 0.8338185108985666, - 0.5089156299842102, - 0.7061412605695164, - 0.9275207599610714, - 0.6214389091739178, - 0.31535705838676426, - 0.8476395308725272, - 0.8, - 0.3520000000000001, - 0.15999999999999998, - 1, - 0.59, - 0.07670000000000013, - 0.11947499999999994, - ] - ) - - for arr in np.split(srgb, len(srgb) / 4): - lut.AddRGBPoint(arr[0], arr[1], arr[2], arr[3]) - - prev_min, prev_max = lut.GetRange() - prev_delta = prev_max - prev_min - node = [0.0, 0.0, 0.0, 0.0, 0.0, 0.0] - next_delta = self.max - self.min - for i in range(lut.GetSize()): - lut.GetNodeValue(i, node) - node[0] = next_delta * (node[0] - prev_min) / prev_delta + self.min - lut.SetNodeValue(i, node) - - return lut - - def init_pwf(self) -> vtkPiecewiseFunction: - pwf = vtkPiecewiseFunction() - - pwf.RemoveAllPoints() - pwf.AddPoint(self.min, 0) - pwf.AddPoint(self.max, 0.7) - - return pwf diff --git a/code/episode_7/src/nova_tutorial/mvvm_factory.py b/code/episode_7/src/nova_tutorial/mvvm_factory.py deleted file mode 100644 index d7cf5f4b..00000000 --- a/code/episode_7/src/nova_tutorial/mvvm_factory.py +++ /dev/null @@ -1,14 +0,0 @@ -"""Module for the factory that creates viewmodels used in the application.""" - -from nova.mvvm.interface import BindingInterface - -from .models.main_model import MainModel -from .view_models.main import MainViewModel - - -def create_viewmodels(binding: BindingInterface) -> dict: - model = MainModel() - vm: dict = {} - vm["main"] = MainViewModel(model, binding) - - return vm diff --git a/code/episode_7/src/nova_tutorial/view_models/main.py b/code/episode_7/src/nova_tutorial/view_models/main.py deleted file mode 100755 index f16d6ee1..00000000 --- a/code/episode_7/src/nova_tutorial/view_models/main.py +++ /dev/null @@ -1,55 +0,0 @@ -"""Module for the main ViewModel.""" - -from typing import Any, Dict - -from nova.mvvm.interface import BindingInterface -from pyvista import Plotter # just for typing -from vtkmodules.vtkRenderingCore import vtkVolume # just for typing - -from ..models.main_model import MainModel -from ..models.plotly import PlotlyConfig -from ..models.pyvista import PyVistaConfig -from ..models.vtk import VTKConfig - - -class MainViewModel: - """Viewmodel class, used to create data<->view binding and react on changes from GUI.""" - - def __init__(self, model: MainModel, binding: BindingInterface): - self.model = model - self.plotly_config = PlotlyConfig() - self.pyvista_config = PyVistaConfig() - self.vtk_config = VTKConfig() - - self.plotly_config_bind = binding.new_bind( - linked_object=self.plotly_config, callback_after_update=self.update_plotly_figure - ) - self.plotly_figure_bind = binding.new_bind() - self.pyvista_config_bind = binding.new_bind(linked_object=self.pyvista_config) - # We didn't add any controls for the VTK rendering, so there's no need to create a data binding here. - - # here we create a bind that connects ViewModel with View. It returns a communicator object, - # that allows to update View from ViewModel (by calling update_view). - # self.model will be updated automatically on changes of connected fields in View, - # but one also can provide a callback function if they want to react to those events - # and/or process errors. - self.config_bind = binding.new_bind(self.model, callback_after_update=self.change_callback) - - def change_callback(self, results: Dict[str, Any]) -> None: - if results["error"]: - print(f"error in fields {results['errored']}, model not changed") - else: - print(f"model fields updated: {results['updated']}") - - def update_view(self) -> None: - self.config_bind.update_in_view(self.model) - - def update_plotly_figure(self, _: Any = None) -> None: - self.plotly_config_bind.update_in_view(self.plotly_config) - self.plotly_figure_bind.update_in_view(self.plotly_config.get_figure()) - - def update_pyvista_volume(self, plotter: Plotter) -> None: - self.pyvista_config.render(plotter) - - def get_vtk_volume(self) -> vtkVolume: - return self.vtk_config.get_volume() diff --git a/code/episode_7/src/nova_tutorial/views/main.py b/code/episode_7/src/nova_tutorial/views/main.py deleted file mode 100755 index 1c7e1b57..00000000 --- a/code/episode_7/src/nova_tutorial/views/main.py +++ /dev/null @@ -1,44 +0,0 @@ -"""Main file.""" - -import logging - -from nova.mvvm.trame_binding import TrameBinding -from nova.trame import ThemedApp -from trame.app import get_server - -from ..mvvm_factory import create_viewmodels -from ..view_models.main import MainViewModel -from .tab_content_panel import TabContentPanel -from .tabs_panel import TabsPanel - -logger = logging.getLogger(__name__) -logger.setLevel(logging.INFO) - - -class MainApp(ThemedApp): - """Main application view class. Calls rendering of nested UI elements.""" - - def __init__(self) -> None: - super().__init__() - self.server = get_server(None, client_type="vue3") - binding = TrameBinding(self.server.state) - self.server.state.trame__title = "NOVA Tutorial" - self.view_models = create_viewmodels(binding) - self.view_model: MainViewModel = self.view_models["main"] - self.create_ui() - - def create_ui(self) -> None: - self.state.trame__title = "NOVA Tutorial" - - with super().create_ui() as layout: - layout.toolbar_title.set_text("NOVA Tutorial") - with layout.pre_content: - TabsPanel(self.view_models["main"]) - with layout.content: - TabContentPanel( - self.server, - self.view_models["main"], - ) - with layout.post_content: - pass - return layout diff --git a/code/episode_7/src/nova_tutorial/views/plotly.py b/code/episode_7/src/nova_tutorial/views/plotly.py deleted file mode 100755 index 0b4e04c8..00000000 --- a/code/episode_7/src/nova_tutorial/views/plotly.py +++ /dev/null @@ -1,34 +0,0 @@ -"""View for Plotly.""" - -import plotly.graph_objects as go -from nova.trame.view.components import InputField -from nova.trame.view.layouts import GridLayout, HBoxLayout -from trame.widgets import plotly - -from ..view_models.main import MainViewModel - -class PlotlyView: - """View class for Plotly.""" - - def __init__(self, view_model: MainViewModel) -> None: - self.view_model = view_model - self.view_model.plotly_config_bind.connect("plotly_config") - self.view_model.plotly_figure_bind.connect(self.update_figure) - - self.create_ui() - - self.view_model.update_plotly_figure() - - def create_ui(self) -> None: - with GridLayout(columns=4, classes="mb-2"): - InputField(v_model="plotly_config.plot_type", type="select") - InputField(v_model="plotly_config.x_axis", type="select") - InputField(v_model="plotly_config.y_axis", type="select") - InputField(v_model="plotly_config.z_axis", disabled=("plotly_config.is_not_heatmap",), type="select") - - with HBoxLayout(halign="center", height="50vh"): - self.figure = plotly.Figure() - - def update_figure(self, figure: go.Figure) -> None: - self.figure.update(figure) - self.figure.state.flush() # This is necessary if you call update asynchronously. diff --git a/code/episode_7/src/nova_tutorial/views/pyvista.py b/code/episode_7/src/nova_tutorial/views/pyvista.py deleted file mode 100644 index 6d6a4504..00000000 --- a/code/episode_7/src/nova_tutorial/views/pyvista.py +++ /dev/null @@ -1,40 +0,0 @@ -"""View for the 3d plot using PyVista.""" - -from typing import Any, Optional - -import pyvista as pv -from nova.trame.view.components import InputField -from nova.trame.view.layouts import GridLayout, HBoxLayout -from pyvista.trame.ui import plotter_ui -from trame.widgets import vuetify3 as vuetify - -from ..view_models.main import MainViewModel - - -class PyVistaView: - """View class for the 3d plot using PyVista.""" - - def __init__(self, view_model: MainViewModel) -> None: - self.view_model = view_model - self.view_model.pyvista_config_bind.connect("pyvista_config") - - self.plotter: Optional[pv.Plotter] = None - - self.create_plotter() - self.create_ui() - - def create_plotter(self) -> None: - self.plotter = pv.Plotter(off_screen=True) - - def create_ui(self) -> None: - vuetify.VCardTitle("PyVista") - with GridLayout(columns=5, classes="mb-2", valign="center"): - InputField(v_model="pyvista_config.colormap", column_span=2, type="select") - InputField(v_model="pyvista_config.opacity", column_span=2, type="select") - vuetify.VBtn("Render", click=self.update) - with HBoxLayout(halign="center", height="50vh"): - plotter_ui(self.plotter) - - def update(self, _: Any = None) -> None: - if self.plotter: - self.view_model.update_pyvista_volume(self.plotter) diff --git a/code/episode_7/src/nova_tutorial/views/tab_content_panel.py b/code/episode_7/src/nova_tutorial/views/tab_content_panel.py deleted file mode 100644 index b3d36eaa..00000000 --- a/code/episode_7/src/nova_tutorial/views/tab_content_panel.py +++ /dev/null @@ -1,31 +0,0 @@ -"""Module for the Tab Content panel.""" - -from trame.widgets import vuetify3 as vuetify -from trame_server import Server - -from ..view_models.main import MainViewModel -from ..views.plotly import PlotlyView -from ..views.pyvista import PyVistaView -from ..views.vtk import VTKView - - -class TabContentPanel: - """View class to render content for a selected tab.""" - - def __init__(self, server: Server, view_model: MainViewModel) -> None: - self.view_model = view_model - self.server = server - self.ctrl = server.controller - self.create_ui() - - def create_ui(self) -> None: - with vuetify.VForm(ref="form") as self.f: - with vuetify.VContainer(classes="pa-0", fluid=True): - with vuetify.VCard(): - with vuetify.VWindow(v_model="active_tab"): - with vuetify.VWindowItem(value=1): - PlotlyView(self.view_model) - with vuetify.VWindowItem(value=2): - PyVistaView(self.view_model) - with vuetify.VWindowItem(value=3): - VTKView(self.view_model) diff --git a/code/episode_7/src/nova_tutorial/views/tabs_panel.py b/code/episode_7/src/nova_tutorial/views/tabs_panel.py deleted file mode 100644 index 7ae696ef..00000000 --- a/code/episode_7/src/nova_tutorial/views/tabs_panel.py +++ /dev/null @@ -1,20 +0,0 @@ -"""Module for the Tab panel.""" - -from trame.widgets import vuetify3 as vuetify - -from ..view_models.main import MainViewModel - - -class TabsPanel: - """View class to render tabs.""" - - def __init__(self, view_model: MainViewModel): - self.view_model = view_model - self.view_model.config_bind.connect("config") - self.create_ui() - - def create_ui(self) -> None: - with vuetify.VTabs(v_model=("active_tab", 0), classes="pl-5"): - vuetify.VTab("Plotly", value=1) - vuetify.VTab("PyVista", value=2) - vuetify.VTab("VTK", value=3) diff --git a/code/episode_7/src/nova_tutorial/views/vtk.py b/code/episode_7/src/nova_tutorial/views/vtk.py deleted file mode 100644 index 258a3561..00000000 --- a/code/episode_7/src/nova_tutorial/views/vtk.py +++ /dev/null @@ -1,47 +0,0 @@ -"""View for the 3d plot using PyVista.""" - -import vtkmodules.vtkRenderingVolumeOpenGL2 # noqa -from nova.trame.view.layouts import HBoxLayout -from trame.widgets import vtk as vtkw -from trame.widgets import vuetify3 as vuetify -from vtkmodules.vtkRenderingCore import vtkRenderer, vtkRenderWindow, vtkRenderWindowInteractor, vtkVolume - -from ..view_models.main import MainViewModel - - -class VTKView: - """View class for the 3d plot using PyVista.""" - - def __init__(self, view_model: MainViewModel) -> None: - self.view_model = view_model - - self.create_vtk() - self.create_ui() - - self.render() - - def create_vtk(self) -> None: - self.renderer = vtkRenderer() - self.renderer.SetBackground(0.7, 0.7, 0.7) - - self.render_window = vtkRenderWindow() - self.render_window.AddRenderer(self.renderer) - self.render_window.OffScreenRenderingOn() - - self.render_window_interactor = vtkRenderWindowInteractor() - self.render_window_interactor.SetRenderWindow(self.render_window) - self.render_window_interactor.GetInteractorStyle().SetCurrentStyleToTrackballCamera() - self.render_window_interactor.Initialize() # Ensure interactor is initialized - - def create_ui(self) -> None: - vuetify.VCardTitle("VTK") - - with HBoxLayout(halign="center", height="50vh"): - self.view = vtkw.VtkRemoteView(self.render_window, interactive_ratio=1) - - def render(self) -> None: - volume = self.view_model.get_vtk_volume() - - self.renderer.Clear() - self.renderer.AddVolume(volume) - self.render_window.Render() diff --git a/episodes/01-Introduction.md b/episodes/01-Introduction.md index 39eb80e4..79de5c2d 100755 --- a/episodes/01-Introduction.md +++ b/episodes/01-Introduction.md @@ -77,11 +77,11 @@ It is also possible to download a zipped copy of the repository directly from th All of the code examples used in this tutorial are available in the `code` directory of the tutorial repository. These examples are built upon the template application that you will clone in the next episode. The code is organized by episode, with each episode having its own subdirectory (e.g., `code/episode_2`, `code/episode_3`, etc.). -Each episode\'s subdirectory contains a complete, self-contained Python project that can be run independently using Poetry. This allows you to easily explore the code examples, run them, and modify them as you go through the tutorial. +Each episode\'s subdirectory contains a complete, self-contained Python project that can be run independently using Pixi. This allows you to easily explore the code examples, run them, and modify them as you go through the tutorial. ::::::::::::::::::::::::::::::::::::::::: callout -Poetry is a tool for dependency management and packaging in Python. It allows you to declare the libraries your project depends on, and it will manage the installation and updating of those dependencies. Poetry also helps you create reproducible builds by locking the versions of your dependencies. It also makes it easier to publish and share your Python projects. +Pixi is a tool for dependency management and packaging in Python. It allows you to declare the libraries your project depends on, and it will manage the installation and updating of those dependencies. Pixi also helps you create reproducible builds by locking the versions of your dependencies. It also makes it easier to publish and share your Python projects. :::::::::::::::::::::::::::::::::::::::::::::::::: @@ -89,13 +89,13 @@ To run the code for a specific episode, navigate to the episode\'s directory in ```bash cd code/episode_X # Replace X with the episode number -poetry install # Install dependencies for this episode -poetry run app # Run the application for this episode +pixi install # Install dependencies for this episode +pixi run app # Run the application for this episode ``` ::::::::::::::::::::::::::::::::::::::::: callout -If you are using the analysis cluster for the tutorial, then please note that `poetry run app` will by default attempt to bind to port 8080 and will fail if the port is already in use. This can happen if others are on the same node as you running the same commands. If this happens, you can change the port the application binds to with `poetry run app --port {myport}`. +If you are using the analysis cluster for the tutorial, then please note that `pixi run app` will by default attempt to bind to port 8080 and will fail if the port is already in use. This can happen if others are on the same node as you running the same commands. If this happens, you can change the port the application binds to with `pixi run app --port {myport}`. :::::::::::::::::::::::::::::::::::::::::::::::: @@ -103,11 +103,11 @@ This structure ensures that each code example is isolated and runnable, making i ## References -* **Nova Documentation**: https://nova-application-development.readthedocs.io/en/latest/ +* **NOVA Documentation**: https://nova-application-development.readthedocs.io/en/latest/ * **nova-galaxy documentation**: https://nova-application-development.readthedocs.io/projects/nova-galaxy/en/latest/ * **nova-trame documentation**: https://nova-application-development.readthedocs.io/projects/nova-trame/en/stable/ * **nova-mvvm documentation**: https://nova-application-development.readthedocs.io/projects/mvvm-lib/en/latest/ -* **Calvera documentation**: https://calvera-test.ornl.gov/docs/ +* **NDIP documentation**: https://ndip-test.ornl.gov/docs/ :::::::::::::::::::::::::::::::::::::::: keypoints - NDIP is a workflow management system used for analsyis and interpretation of neutron scattering data. diff --git a/episodes/02-Copy-Template.md b/episodes/02-Copy-Template.md index 9bb43ac3..3595f4b8 100755 --- a/episodes/02-Copy-Template.md +++ b/episodes/02-Copy-Template.md @@ -9,7 +9,7 @@ exercises: 3 - Clone the NOVA template application using `copier`. - Understand the basic project structure created by the template. - Identify key files in the project (e.g., `pyproject.toml`). -- Install project dependencies using `poetry`. +- Install project dependencies using `pixi`. - Deploy the template application to NDIP :::::::::::::::::::::::::::::::::::::::::::::::::: @@ -18,7 +18,7 @@ exercises: 3 - How do I quickly set up a starting point for a NOVA project? - What files and directories are included in the NOVA template application? -- How does `poetry` manage project dependencies and virtual environments? +- How does `pixi` manage project dependencies and virtual environments? :::::::::::::::::::::::::::::::::::::::::::::::::: @@ -37,14 +37,15 @@ The setup section detailed the prerequisites required for the tutorial. One of t To clone the template application, run the following command: ```bash -copier copy https://code.ornl.gov/ndip/project-templates/nova-application-template.git nova_tutorial +copier copy https://github.com/nova-sdk/nova-application-template nova_tutorial ``` This command will download the template to a directory called `nova_tutorial`. Copier will prompt you with a series of questions. Please answer the questions as follows: -* **What kind of application are you creating?** - > Enter `Tutorial` - +* **What kind of application are you creating?** + + > Select `Tutorial` + * **What is your project name?** > Enter `Nova Tutorial` @@ -53,30 +54,20 @@ This command will download the template to a directory called `nova_tutorial`. C > Press enter to accept the default. -* **Do you want to install Mantid for your project?** +* **What category will your tool belong to?** - > Enter `no` + > Select `Generic` -* ** Are you developing a GUI application using MVVM pattern?** - - > Enter `yes` - -* ** Which library will you use?** +* **Which GUI library will you use?** > Select `Trame` -* **Do you want a template with multiple tabs? +* **Do you want a template with multiple tabs?** > Enter `yes` After answering these questions, `copier` will clone the template repository and create your project within the `nova_tutorial` directory. -::::::::::::::::::::::::::::::::::::::::: callout - -If your application requires Mantid, you can enter Yes and Mantid will be added to your dockerfile. However, for local development you will still need to properly set up your conda environment. - -:::::::::::::::::::::::::::::::::::::::::::::::::: - ## Install Project Dependencies 1. **Clone the Template:** Follow the instructions in the "Getting Started with a Template Application" section to clone the NOVA template using `copier`. This will create a new directory (e.g., `nova_tutorial`) containing your project files. @@ -86,10 +77,10 @@ If your application requires Mantid, you can enter Yes and Mantid will be added cd nova_tutorial ``` -3. **Install Dependencies with Poetry:** Use Poetry to install the project dependencies defined in the `pyproject.toml` file: +3. **Install Dependencies with Pixi:** Use Pixi to install the project dependencies defined in the `pyproject.toml` file: ```bash - poetry install + pixi install ``` This command will create a virtual environment for your project and install all required libraries, including the NOVA libraries and Trame. @@ -198,7 +189,8 @@ Now that we have our template application set up, we need to integrate it with t You can initialize your Git repository and push it to the correct location in the NDIP GitLab: ```bash -poetry run init-repo +pixi run init-repo +pixi run pre-commit install ``` ::::::::::::::::::::::::::::::::::::::::: callout @@ -212,6 +204,7 @@ This script will: 3. Add all project files to the repository 4. Create an initial commit (if needed) 5. Push the code to the GitLab repository +6. Set up the pre-commit hooks to lint your code before future pushes ### Continuous Integration and Container Building @@ -223,6 +216,10 @@ Once your code is pushed to GitLab, the included CI/CD pipeline will automatical The Docker image tag is derived from your project's version in `pyproject.toml`. Each time you update the version and push, a new container will be built automatically. +::::::::::::::::::::::::::::::::::::::::: callout +Note that production images are not automatically built and pushed to Harbor. When ready to push to production, you should first manually trigger the `build-prod-image` stage in the CI. +:::::::::::::::::::::::::::::::::::::::::::::::: + ### Tool XML File The template has already generated a Galaxy tool XML file for your project. You can find this file at: @@ -250,7 +247,7 @@ After the manual changes we made in the previous step, your tool XML will be cor To deploy your tool to the NDIP platform, you need to add the XML file to the galaxy-tools repository. The template includes a utility for this: ```bash -poetry run deploy-prototype +pixi run deploy-prototype ``` This script will: @@ -260,7 +257,7 @@ This script will: 3. Commit the changes 4. Push to the `prototype` branch of the galaxy-tools repository -Once your XML file is pushed to the prototype branch, an automated CI job will deploy your tool to the calvera-test instance. You can then access your tool through the NDIP web interface at https://calvera-test.ornl.gov. +Once your XML file is pushed to the prototype branch, an automated CI job will deploy your tool to the ndip-test instance. You can then access your tool through the NDIP web interface at https://ndip-test.ornl.gov. ::::::::::::::::::::::::::::::::::::::::: callout The tool XML utility has been enhanced to check for the existence of your Docker image before proceeding with the push. This helps prevent deployment errors by ensuring your container has been built first. @@ -286,21 +283,21 @@ Let's understand the key components that make your tool work in NDIP: - After XML is merged → Your tool appears in the NDIP interface ::::::::::::::::::::::::::::::::::::::::: callout -In a production environment, when your tool is ready for users, you would run the deploy-production tool. This will create a merge request to the dev branch. The NDIP team reviews these changes, merges them, and your tool will be deployed to the production instance during the next deployment. +In a production environment, when your tool is ready for users, you would run `pixi run deploy-production`. This will create a merge request to the dev branch. The NDIP team reviews these changes, merges them, and your tool will be deployed to the production instance during the next deployment. :::::::::::::::::::::::::::::::::::::::::::::::: ## References -* **Nova Documentation**: https://nova-application-development.readthedocs.io/en/latest/ +* **NOVA Documentation**: https://nova-application-development.readthedocs.io/en/latest/ * **nova-galaxy documentation**: https://nova-application-development.readthedocs.io/projects/nova-galaxy/en/latest/ * **nova-trame documentation**: https://nova-application-development.readthedocs.io/projects/nova-trame/en/stable/ * **nova-mvvm documentation**: https://nova-application-development.readthedocs.io/projects/mvvm-lib/en/latest/ -* **Calvera documentation**: https://calvera-test.ornl.gov/docs/ +* **NDIP documentation**: https://ndip-test.ornl.gov/docs/ :::::::::::::::::::::::::::::::::::::::: keypoints - Nova provides a template application to help get started developing your application. - Use the copier tool to clone the template application. -- Poetry is a project management tool used to install dependencies and manage virtual environments. +- Pixi is a project management tool used to install dependencies and manage virtual environments. - The template application includes everything you need to get started such as basic CI, dockerfile, and tests. - Docker containers package your application and all its dependencies for deployment. - Galaxy tool XML files define how your tool appears and functions in NDIP. diff --git a/episodes/03-Nova-Galaxy.md b/episodes/03-Nova-Galaxy.md index 516f3772..42cadcda 100755 --- a/episodes/03-Nova-Galaxy.md +++ b/episodes/03-Nova-Galaxy.md @@ -29,7 +29,8 @@ In this episode, we will start using the `nova-galaxy` library to interact with ::::::::::::::::::::::::::::::::::::::: callout -From the command line, type `poetry add nova-galaxy@^0.7.0`. This command will add the nova-galaxy library to the pyproject.toml file as a project dependency. Then run `poetry install` to update your project dependencies. +From the command line, type `pixi add --pypi nova-galaxy`. This command will add the nova-galaxy library to the pyproject.toml file as a project dependency and install it into the environment. + :::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::: callout @@ -95,7 +96,7 @@ This section describes the output from the tool. The Fractal tool results in a s ``` -A comprehensive list of tools, and links to their XML, can be found in Calvera's documentation on the [tools](https://calvera.ornl.gov/docs/tools/) page. +A comprehensive list of tools, and links to their XML, can be found in NDIP's documentation on the [tools](https://ndip.ornl.gov/docs/tools/) page. ## Setting up the Fractal tool @@ -134,7 +135,7 @@ class Fractal: params.add_input(name="option", value=self.fractal_type) ``` -Note that we create a `Tool` object with the `id="neutrons_fractal"`. This tells `nova-galaxy` which NDIP tool we want to run. The obvious question at this point is how do we know the id of the tool and what parameters it expects? We can look at the tool\'s launch page in calvera for some hints but ultimately we have to look at the tool\'s [xml file](https://code.ornl.gov/ndip/galaxy-tools/-/blob/dev/tools/neutrons/test_tools/fractal.xml?ref_type=heads). +Note that we create a `Tool` object with the `id="neutrons_fractal"`. This tells `nova-galaxy` which NDIP tool we want to run. The obvious question at this point is how do we know the id of the tool and what parameters it expects? We can look at the tool\'s launch page in NDIP for some hints but ultimately we have to look at the tool\'s [xml file](https://code.ornl.gov/ndip/galaxy-tools/-/blob/dev/tools/neutrons/test_tools/fractal.xml?ref_type=heads). * **Connect and Run the Tool**: The `with conn.connect() as galaxy_connection:` block establishes a connection to NDIP and ensures proper handling of the connection: @@ -143,8 +144,8 @@ Note that we create a `Tool` object with the `id="neutrons_fractal"`. This tells data_store = galaxy_connection.create_data_store(name="fractal_store") data_store.persist() print("Executing fractal tool. This might take a few minutes.") - output = tool.run(data_store, params) - output.get_dataset("output").download("tmp.png") + output = tool.run(data_store, params, wait=True) + output.get_dataset("output").download("image.png") print("Fractal tool finished successfully.") ``` @@ -172,7 +173,7 @@ def main() -> None: To run the code, use the following command in the top level of your `nova_tutorial` project: ```bash -poetry run app +pixi run app ``` You should see `Fractal tool finished successfully.` printed to the console. @@ -247,7 +248,7 @@ In both cases, an error is received from the ndip-galaxy library. When changing * **nova-galaxy documentation**: https://nova-application-development.readthedocs.io/projects/nova-galaxy/en/latest/ * **nova-trame documentation**: https://nova-application-development.readthedocs.io/projects/nova-trame/en/stable/ * **nova-mvvm documentation**: https://nova-application-development.readthedocs.io/projects/mvvm-lib/en/latest/ -* **Calvera documentation**: https://calvera-test.ornl.gov/docs/ +* **NDIP documentation**: https://ndip-test.ornl.gov/docs/ :::::::::::::::::::::::::::::::::::::::: keypoints - Nova-Galaxy can be used to create powerful python scripts which leverage the functionality of NDIP. diff --git a/episodes/04-MVVM-Design-Pattern.md b/episodes/04-MVVM-Design-Pattern.md index 2910f5f3..992a8d52 100755 --- a/episodes/04-MVVM-Design-Pattern.md +++ b/episodes/04-MVVM-Design-Pattern.md @@ -166,7 +166,7 @@ The template creates a well-organized project structure following best practices * `nova_tutorial/README.md`: A Markdown file providing a description of your project, instructions for setup and usage, and any other relevant information. -* `pyproject.toml`: A configuration file for Poetry, the dependency management and packaging tool used by NOVA. It specifies project dependencies, build settings, and other metadata. +* `pyproject.toml`: A configuration file for Pixi, the dependency management and packaging tool used by NOVA. It specifies project dependencies, build settings, and other metadata. ## Implementing MVVM with `nova-mvvm` and Pydantic @@ -197,7 +197,7 @@ def main() -> None: app.server.start(**kwargs) ``` -* **Adding a Placeholder Method to the ViewModel (`src/nova_tutorial/app/view_models/main.py`) (Modify):** +* **Adding a Placeholder Method to the ViewModel (`src/nova_tutorial/app/view_models/main_view_model.py`) (Modify):** Add a `run_fractal` method to the `MainViewModel`. For now, it just prints a message to the console. This confirms that the button click is connected to the ViewModel. @@ -214,7 +214,7 @@ This is the UI for our Fractal interaction. It includes a button that calls the from trame.widgets import vuetify3 as vuetify from nova.trame.view.components import InputField -from nova_tutorial.app.view_models.main import MainViewModel +from nova_tutorial.app.view_models.main_view_model import MainViewModel class FractalTab: def __init__(self, view_model: MainViewModel) -> None: @@ -233,10 +233,11 @@ class FractalTab: Add the "Fractal" tab to the tab bar. ```python - with vuetify.VTabs(v_model=("active_tab", 0), classes="pl-5"): - vuetify.VTab("Fractal", value=1) # Add Fractal Tab - vuetify.VTab("Sample Tab 1", value=2) - vuetify.VTab("Sample Tab 2", value=3) + with client.DeepReactive("view_state"): + with vuetify.VTabs(v_model="view_state.active_tab", classes="pl-5"): + vuetify.VTab("Fractal", value=0) # Add Fractal Tab + vuetify.VTab("Sample Tab 1", value=1) + vuetify.VTab("Sample Tab 2", value=2) ``` * **Modify the tab panel content (`src/nova_tutorial/app/views/tab_content_panel.py`) (Modify):** @@ -246,19 +247,18 @@ Display the `FractalTab` content when the "Fractal" tab is selected. ```python from .fractal_tab import FractalTab # Import the FractalTab - # ... (rest of the file) ... - with vuetify.VWindow(v_model="active_tab"): - with vuetify.VWindowItem(value=1): - FractalTab(self.view_model) # Add FractalTab - with vuetify.VWindowItem(value=2): - SampleTab1() - with vuetify.VWindowItem(value=3): - SampleTab2() + def create_ui(self) -> None: + with VBoxLayout(v_show="view_state.active_tab == 0", stretch=True): + FractalTab(self.view_model) # Add FractalTab + with VBoxLayout(v_show="view_state.active_tab == 1", stretch=True): + SampleTab1() + with VBoxLayout(v_show="view_state.active_tab == 2", stretch=True): + SampleTab2() ``` **Demonstration (Initial UI and ViewModel Connection):** -Run the application: `poetry run app` +Run the application: `pixi run app` You should see a new "Fractal" tab in the application. Click the "Run Fractal" button. You should see "run_fractal method called!" printed in your terminal. This demonstrates that the button click in the View is successfully triggering the `run_fractal` method in the ViewModel, even though the method doesn't do anything substantial yet. This establishes the basic MVVM wiring. @@ -282,21 +282,24 @@ from nova.galaxy import Connection, Parameters, Tool * **Update class variables:** Use Pydantic's `Field` for type hinting and validation. Add the `image_data` field. ```python -class Fractal(BaseModel): +class FractalData(BaseModel): fractal_type: Literal["mandelbrot", "julia", "random", "markus"] = Field(default="mandelbrot") - galaxy_url: str = Field(default_factory=lambda: os.getenv("GALAXY_URL"), description="NDIP Galaxy URL") - galaxy_key: str = Field(default_factory=lambda: os.getenv("GALAXY_API_KEY"), description="NDIP Galaxy API Key") + galaxy_url: str = Field(default=os.getenv("GALAXY_URL", ""), description="NDIP Galaxy URL") + galaxy_key: str = Field(default=os.getenv("GALAXY_API_KEY", ""), description="NDIP Galaxy API Key") image_data: str = Field(default="", description="Base64 encoded PNG") +class Fractal: + # ... def set_fractal_type(self, fractal_type: str): self.fractal_type = fractal_type + # ... ``` * **Decode the data:** Update how the image is decoded. ```python - output.get_dataset("output").download("tmp.png") + output.get_dataset("output").download("image.png") - with open("tmp.png", "rb") as image_file: + with open("image.png", "rb") as image_file: self.image_data = f"data:image/png;base64,{b64encode(image_file.read()).decode()}" ``` @@ -305,47 +308,68 @@ class Fractal(BaseModel): Import and include the `Fractal` model as a field in the `MainModel`. ```python +from pydantic import BaseModel, Field from .fractal import Fractal # Import Fractal -class MainModel(BaseModel): - # ... (other fields) ... +class Config(BaseModel): + # ... (previous MainModel) ... password: str = Field(default="test_password", title="User Password") - fractal: Fractal = Field(default_factory=Fractal) #Add Fractal Model -``` -* **Connect the UI elements in FractalTab (`src/nova_tutorial/app/views/fractal_tab.py`) (Modify):** - -Update the create UI section to use InputField and the image. -```python -from nova.trame.view.components import InputField - # ...(rest of file)... - def create_ui(self) -> None: - InputField(v_model="config.fractal.fractal_type") - vuetify.VBtn( - "Run Fractal", - click=self.view_model.run_fractal - ) - vuetify.VImg(src=("config.fractal.image_data",), height="400", width="400") +class MainModel: + def __init__(self) -> None: + self.config = Config() + self.fractal = Fractal() ``` -* **Add Full Functionality to the View Model (`src/nova_tutorial/app/view_models/main.py`) (Modify)** +* **Add Full Functionality to the View Model (`src/nova_tutorial/app/view_models/main_view_model.py`) (Modify)** Update the code in the run_fractal method. ```python + def __init__(self) -> None: + # ... + self.config_bind = binding.new_bind(self.model.config, callback_after_update=self.change_callback) + self.fractal_bind = binding.new_bind(self.model.fractal.data, callback_after_update=self.change_callback) + # ... + def run_fractal(self) -> None: self.model.fractal.run_fractal_tool() self.update_view() + + def update_view(self) -> None: + self.config_bind.update_in_view(self.model.config) + self.fractal_bind.update_in_view(self.model.fractal.data) +``` + +* **Connect the UI elements in FractalTab (`src/nova_tutorial/app/views/fractal_tab.py`) (Modify):** + +Update the create UI section to use InputField and the image. +```python +from nova.trame.view.components import InputField + + # ...(rest of file)... + def __init__(self) -> None: + self.view_model = view_model + self.view_model.fractal_bind.connect("fractal") + self.create_ui() + + def create_ui(self) -> None: + with VBoxLayout(): + InputField(v_model="fractal.fractal_type") + with VBoxLayout(classes="mb-2", halign="left"): + vuetify.VBtn("Run Fractal", click=self.view_model.run_fractal) + with VBoxLayout(stretch=True): + vuetify.VImg(src=("fractal.image_data",), classes="h-100 w-100") ``` **Final Demonstration (Full Application):** -Run the application: `poetry run app` +Run the application: `pixi run app` Now, when you click "Run Fractal," the Fractal tool will execute in Galaxy, and the resulting image will be displayed in the UI. You can also change the `fractal_type` using the input field. This demonstrates the complete MVVM flow, with data binding, Pydantic validation, and the interaction between the View, ViewModel, and Model. ::::::::::::::::::::::::::::::::::::::::: callout -If you don't want Trame to launch a tab by default, you can instead run ```poetry run app --server```. +If you don't want Trame to launch a tab by default, you can instead run ```pixi run app --server```. :::::::::::::::::::::::::::::::::::::::::::::::::: @@ -355,12 +379,12 @@ Now that we have updated our Fractal tool and integrated it into the NOVA applic Here are the steps to push your changes and deploy the tool: -1. **Bump the version:** Open the `pyproject.toml` file in the root of your project. Increment the `version` number to `0.2.0` in the `[tool.poetry]` section. Save the file. +1. **Bump the version:** Open the `pyproject.toml` file in the root of your project. Increment the `version` number to `0.2.0` in the `[project]` section. Save the file. 2. **Stage your changes:** Use `git add .` to stage all changes that have been made to the application. 3. **Commit your changes:** Create a commit with a descriptive message: `git commit -m "Update Fractal tool with MVVM, bump to version 0.2.0"`. 4. **Push to the repository:** Push your committed changes to the remote repository with `git push`. 5. **Wait for CI/CD:** The push will trigger a CI/CD pipeline in gitlab. Wait for the pipeline to complete which includes building the container image for your tool. You can monitor the pipeline status in the Gitlab interface. -6. **Deploy the tool:** Once the pipeline is successful, run the deployment command from your project's root directory: `poetry run deploy-prototype`. +6. **Deploy the tool:** Once the pipeline is successful, run the deployment command from your project's root directory: `pixi run deploy-prototype`. This process ensures that your updated tool is built, containerized, and made available through NDIP. @@ -378,7 +402,7 @@ This process ensures that your updated tool is built, containerized, and made av print("Current message:", self._message) # Print message ``` -* Run the application (`poetry run app`). Observe the console output. Verify that: +* Run the application (`pixi run app`). Observe the console output. Verify that: * The message "Attempted to set fractal type programmatically to: invalid-fractal-type" is printed. * The "Current fractal type (after attempt):" is still "mandelbrot" indicating the invalid update was rejected. * The "Current message:" now contains a "Validation Error" message from Pydantic. @@ -388,8 +412,8 @@ This process ensures that your updated tool is built, containerized, and made av ::::::::::::::::::::::::::::::::::::::: challenge **Inspect ViewModel State** -* In `src/nova_tutorial/app/view_models/main.py`, add `print` statements within the `MainViewModel.__init__` method to print the initial values of `self.fractal`, `self.fractal.galaxy_url`, and `self.fractal.fractal_type`. -* Run the application (`poetry run app`). Observe the output in the console. Verify that the initial values are printed as expected. +* In `src/nova_tutorial/app/view_models/main_view_model.py`, add `print` statements within the `MainViewModel.__init__` method to print the initial values of `self.fractal`, `self.fractal.galaxy_url`, and `self.fractal.fractal_type`. +* Run the application (`pixi run app`). Observe the output in the console. Verify that the initial values are printed as expected. * Now, modify the `MainViewModel.__init__` method to change the initial value of `self.fractal.fractal_type` to "julia". Run the application again and confirm that the printed message has changed. :::::::::::::::::::::::::::::::::::::::::::::::::: @@ -400,7 +424,7 @@ This process ensures that your updated tool is built, containerized, and made av * **nova-galaxy documentation**: https://nova-application-development.readthedocs.io/projects/nova-galaxy/en/latest/ * **nova-trame documentation**: https://nova-application-development.readthedocs.io/projects/nova-trame/en/stable/ * **nova-mvvm documentation**: https://nova-application-development.readthedocs.io/projects/mvvm-lib/en/latest/ -* **Calvera documentation**: https://calvera-test.ornl.gov/docs/ +* **NDIP documentation**: https://ndip-test.ornl.gov/docs/ :::::::::::::::::::::::::::::::::::::::: keypoints - MVVM stands for Model, View, View-Model. diff --git a/episodes/05-Working-with-Trame.md b/episodes/05-Working-with-Trame.md index f9e46948..4fddde9c 100755 --- a/episodes/05-Working-with-Trame.md +++ b/episodes/05-Working-with-Trame.md @@ -75,14 +75,13 @@ Layouts are responsible for arraging your content in a consistent manner. In Tra `nova-trame` provides a basic layout and theme that you can access via the `ThemedApp` class. The template app will setup your main view class to inherit from `ThemedApp` already, but to see how it works let\'s try moving the button to run the fractal tool from the fractal tab into `post_content` slot in the layout. -**1. `src/nova_tutorial/app/views/main.py` (Modify):** +**1. `src/nova_tutorial/app/views/main_view.py` (Modify):** ```python import logging from nova.mvvm.trame_binding import TrameBinding from nova.trame import ThemedApp -from nova.trame.view import layouts from trame.app import get_server from trame.widgets import vuetify3 as vuetify @@ -106,6 +105,7 @@ class MainApp(ThemedApp): self.create_ui() def create_ui(self) -> None: + self.set_theme("CompactTheme") self.state.trame__title = "Fractal Tool GUI" with super().create_ui() as layout: @@ -129,8 +129,10 @@ class MainApp(ThemedApp): ```python def create_ui(self) -> None: - InputField(v_model="config.fractal.fractal_type") - vuetify.VImg(src=("config.fractal.image_data",), height="400", width="400") + with VBoxLayout(): + InputField(v_model="fractal.fractal_type") + with VBoxLayout(stretch=True): + vuetify.VImg(src=("fractal.image_data",), classes="h-100 w-100") ``` :::::::::::::::::::::::::: callout @@ -180,14 +182,14 @@ class FractalTypeOptions(str, Enum): random = "random" markus = "markus" -class Fractal(BaseModel): - fractal_type: FractalTypeOptions = Field(default=FractalTypeOptions.mandelbrot) +class FractalData(BaseModel): + fractal_type: FractalTypeOptions = Field(default=FractalTypeOptions.mandelbrot, title="Fractal Type") ``` **4. `src/nova_tutorial/app/views/fractal_tab.py` (Modify):** ```python - InputField(v_model="config.fractal.fractal_type", type="select") + InputField(v_model="fractal.fractal_type", type="select") ``` ### `RemoteFileInput` @@ -207,8 +209,9 @@ class SampleTab1: self.create_ui() def create_ui(self) -> None: - RemoteFileInput(v_model="config.file", base_paths=["/HFIR", "/SNS"]) - InputField(v_model="config.username") + with VBoxLayout(): + RemoteFileInput(v_model="config.file", base_paths=["/HFIR", "/SNS"]) + InputField(v_model="config.username") ``` **6. `src/nova_tutorial/app/models/main_model.py` (Modify):** @@ -220,7 +223,7 @@ from pydantic import BaseModel, Field from .fractal import Fractal -class MainModel(BaseModel): +class Config(BaseModel): username: str = Field( default="test_name", min_length=1, @@ -298,15 +301,15 @@ By combining these layout components, you can create complex and responsive UI l As an example, we can use the layout classes to center the "Run Fractal" button. -**7. `src/nova_tutorial/app/views/main.py` (Modify):** +**7. `src/nova_tutorial/app/views/main_view.py` (Modify):** ```python -from nova.trame.view import layouts +from nova.trame.view.layouts import HBoxLayout ... with layout.post_content: - with layouts.HBoxLayout(classes="my-2", halign="center"): + with HBoxLayout(classes="my-2", halign="center"): vuetify.VBtn( "Run Fractal", click=self.view_model.run_fractal # calls the run_fractal_tool method @@ -328,7 +331,7 @@ For a more detailed explanation of how to work with our layout and theme, please To run the code, use the following command in the top level of your `nova_tutorial` project: ```bash -poetry run app +pixi run app ``` You should now see the simple UI. When you click the "Sample Tab 1" and "Sample Tab 2" tabs, you should now see the updated content with the new UI components. @@ -342,66 +345,65 @@ Now that we understand the basics of working with Trame, let\'s make the view fo ```python def __init__(self, view_model: MainViewModel) -> None: self.view_model = view_model - self.view_model.running_bind.connect("running") + self.view_model.fractal_bind.connect("fractal") self.create_ui() def create_ui(self) -> None: - InputField(v_model="config.fractal.fractal_type", classes="mb-2", type="select") - vuetify.VProgressCircular(v_if="running", indeterminate=True) - vuetify.VImg(v_else=True, src=("config.fractal.image_data",), height="400", width="400") + with VBoxLayout(): + InputField(v_model="fractal.fractal_type", type="select") + with VBoxLayout(halign="center", valign="center", stretch=True): + vuetify.VProgressCircular(v_if="view_state.running", indeterminate=True) + vuetify.VImg(v_else=True, src=("fractal.image_data",), classes="h-100 w-100") ``` We will need to add a data binding for `running`, as well. We choose to place this directly in the view model as this is not relevant to running the fractal tool on NDIP. -**8. `src/nova_tutorial/app/view_models/main.py` (Modify):** +**8. `src/nova_tutorial/app/view_models/main_view_model.py` (Modify):** ```python -from asyncio import create_task, sleep -from threading import Thread - # ... (rest of the file) ... +class ViewState(BaseModel): + """View state for the application.""" - def __init__(self, model: MainModel, binding: BindingInterface): - self.model = model - self.running = False + active_tab: str = Field(default="0") + running: bool = Field(default=False) - # here we create a bind that connects ViewModel with View. It returns a communicator object, - # that allows to update View from ViewModel (by calling update_view). - # self.model will be updated automatically on changes of connected fields in View, - # but one also can provide a callback function if they want to react to those events - # and/or process errors. - self.config_bind = binding.new_bind(self.model, callback_after_update=self.change_callback) - self.running_bind = binding.new_bind() - def update_view(self) -> None: - self.config_bind.update_in_view(self.model) - self.running_bind.update_in_view(self.running) +class MainViewModel: + def __init__(self, model: MainModel, binding: BindingInterface): + self.model = model + self.binding = binding + # ... ``` -Finally, we manipulate our new view state based on the current status of the tool. Because the fractal tool takes a long time to complete, we offload it to a background thread. If we do not do this, then Trame will not update the view until the tool has finished running, which defeats the purpose of this change. +Next, we manipulate our new view state based on the current status of the tool. Because the fractal tool takes a long time to complete, we offload it to a background thread. If we do not do this, then Trame will not update the view until the tool has finished running, which defeats the purpose of this change. ```python + def update_view(self) -> None: + self.config_bind.update_in_view(self.model.config) + self.fractal_bind.update_in_view(self.model.fractal.data) + self.view_state_bind.update_in_view(self.view_state) + def run_fractal(self) -> None: - self.running = True + self.view_state.running = True self.update_view() - # update_view won't take effect until this method returns a value, so we must offload this long-running task to - # a background thread for our conditional rendering to work. - fractal_tool_thread = Thread(target=self.run_fractal_in_background, daemon=True) - fractal_tool_thread.start() + worker = self.binding.new_worker(self.model.fractal.run_fractal_tool) + worker.connect_finished(self.on_fractal_finished) + worker.start() - # We also need to know when the tool is done running so that we can - create_task(self.monitor_fractal()) + def on_fractal_finished(self) -> None: + self.view_state.running = False + self.update_view() +``` - def run_fractal_in_background(self) -> None: - self.model.fractal.run_fractal_tool() - self.running = False +**9. `src/nova_tutorial/app/models/fractal.py` (Modify):** - async def monitor_fractal(self) -> None: - while self.running: - await sleep(0.1) - self.update_view() +```python + def run_fractal_tool(self, progress: Callable): ``` +Finally, when we call run_fractal_tool through a worker it will be passed a method that it can call during execution to send updates back to the view. We won't use this right now, but we do need to modify the function to avoid an error when the worker is started. + ::::::::::::::::::::::::::::::::: callout With any Trame or `nova-trame` component, you can use the `v_if`, `v_else_if`, and `v_else` arguments to only show the component in the interface when a condition is true. The condition can be a reference to your model, similar to the `v_model` argument, or it can be a full JavaScript expression for complex use cases. ::::::::::::::::::::::::::::::::::::::::: @@ -432,7 +434,7 @@ Experiment with customizing the appearance of the Vuetify components using the v * **nova-trame documentation**: https://nova-application-development.readthedocs.io/projects/nova-trame/en/stable/ * **nova-mvvm documentation**: https://nova-application-development.readthedocs.io/projects/mvvm-lib/en/latest/ * **Vuetify Documentation**: https://vuetifyjs.com/en/ -* **Calvera documentation**: https://calvera-test.ornl.gov/docs/ +* **NDIP documentation**: https://NDIP-test.ornl.gov/docs/ ``` diff --git a/episodes/06-Advanced-Data-Modeling.md b/episodes/06-Advanced-Data-Modeling.md index f3cfd420..0dfb3ddb 100755 --- a/episodes/06-Advanced-Data-Modeling.md +++ b/episodes/06-Advanced-Data-Modeling.md @@ -65,7 +65,7 @@ Let\'s start by setting up a new application from the template. To clone the template application, run the following command: ```bash -copier copy https://code.ornl.gov/ndip/project-templates/nova-application-template.git advanced_pydantic +copier copy https://github.com/nova-sdk/nova-application-template advanced_pydantic ``` This command will download the template to a directory called `advanced_pydantic`. Copier will prompt you with a series of questions. Please answer the questions as follows: @@ -85,7 +85,7 @@ After that, go into the created folder and install project dependencies: ```bash cd advanced_pydantic -poetry install +pixi install ``` @@ -93,7 +93,7 @@ poetry install Pydantic uses Python type hints to define data models. When you create an instance of a Pydantic model, Pydantic automatically validates the input data against the defined types and constraints. -1. Create a User Model (`src/advanced_pydantic/main.py`) (Modify): +1. Create a User Model (`src/advanced_pydantic/app/main.py`) (Modify): ```python from pydantic import BaseModel, Field @@ -107,7 +107,7 @@ In this example, we define a `User` model with two fields: `id` and `name`. We u When you create an instance of the `User` model, Pydantic automatically validates the input data. -2. Create an instance of a User (`src/advanced_pydantic/main.py`) (Modify): +2. Create an instance of a User (`src/advanced_pydantic/app/main.py`) (Modify): ```python from pydantic import ValidationError @@ -122,7 +122,7 @@ def main() -> None: and run it with ```bash -poetry run app +pixi run app ``` @@ -133,7 +133,7 @@ If the input data is invalid, Pydantic raises a `ValidationError` exception with When working with structured data, it\'s common to have nested objects. For example, a User model from the above example might have multiple Address entries. In Pydantic, we can achieve this by creating nested models. -1. Creating the Address Model (`src/advanced_pydantic/main.py`) (Modify). +1. Creating the Address Model (`src/advanced_pydantic/app/main.py`) (Modify). The Address model represents a simple address with three fields: @@ -153,7 +153,7 @@ class Address(BaseModel): type: Literal["home", "work"] = Field() ``` -2. Using the Address Model as a Nested Field (`src/advanced_pydantic/main.py`) (Modify). +2. Using the Address Model as a Nested Field (`src/advanced_pydantic/app/main.py`) (Modify). Update the User model so that it now contains: @@ -170,7 +170,7 @@ class User(BaseModel): addresses: List[Address] = Field(min_length=1) ``` -3. Test the model (`src/advanced_pydantic/main.py`) (Modify). +3. Test the model (`src/advanced_pydantic/app/main.py`) (Modify). ```python def main() -> None: @@ -194,7 +194,7 @@ def main() -> None: and run it with ```bash -poetry run app +pixi run app ``` ::::::::::::::::::::::::::::::::::::::::: callout @@ -207,7 +207,7 @@ Sometimes, simple validation like checking the minimum length is not enough. In For example, let\'s say we have a User model where only even IDs are allowed. We can enforce this constraint using the `@field_validator decorator`. -4. Using the `@field_validator decorator` (`src/advanced_pydantic/main.py`) (Modify): +4. Using the `@field_validator decorator` (`src/advanced_pydantic/app/main.py`) (Modify): ```python from pydantic import BaseModel, Field, field_validator @@ -248,7 +248,7 @@ In some cases, you may need to validate the entire model, not just individual fi For example, let\'s say we have a User model where the name and id must meet specific conditions together. For instance, we only allow users with even IDs to have names that start with a capital letter. We can enforce this logic using a @model_validator. -5. Using the `@model_validator decorator` (`src/advanced_pydantic/main.py`) (Modify): +5. Using the `@model_validator decorator` (`src/advanced_pydantic/app/main.py`) (Modify): ```python from pydantic import BaseModel, Field, model_validator @@ -285,44 +285,28 @@ Now, let\'s create a simple Trame-based GUI application. To clone the template application, run the following command: ```bash -copier copy https://code.ornl.gov/ndip/project-templates/nova-application-template.git pydantic_mvvm +copier copy https://github.com/nova-sdk/nova-application-template pydantic_mvvm ``` This command will download the template to a directory called `pydantic_mvvm`. Copier will prompt you with a series of questions. Please answer the questions as follows: +* **What kind of application are you creating?** -* **What kind of application are you creating?** - > Enter `Nova Application` + > Select `Nova Application` * **What is your project name?** > Enter `Trame with Pydantic` -* **What is your Python package name (use Python naming conventions)?** +* **All other questions** > Press enter to accept the default. -* **Do you want to install Mantid for your project?** - - > Enter `n` - -* **Are you developing a GUI application using MVVM pattern?** - - > Enter `y` - -* **Which library will you use?** - - > Select `Trame` - -* **Do you want a template with multiple tabs?** - - > Enter `n` - After that, go into the created folder and install project dependencies: ```bash cd pydantic_mvvm -poetry install +pixi install ``` @@ -339,7 +323,7 @@ class SettingsModel(BaseModel): port: int = Field(default=8080, gt=0, lt=65536, title="Port Number", description="The port to listen on.", examples=["12345"]) ``` -2. Create a binding for the model (`src/trame_with_pydantic/app/view_models/main.py`) (Modify): +2. Create a binding for the model (`src/trame_with_pydantic/app/view_models/main_view_model.py`) (Modify): In your ViewModel, create a binding for this Model and clean up the code created by the template engine, we don't need it for this example): @@ -355,7 +339,7 @@ class MainViewModel: self.settings_bind = binding.new_bind(self.settings) ``` -3. In your view, remove all other fields and add the following InputField (`src/trame_with_pydantic/app/views/main.py`) (Modify): +3. In your view, remove all other fields and add the following InputField (`src/trame_with_pydantic/app/views/main_view.py`) (Modify): ```python @@ -366,7 +350,7 @@ class MainViewModel: ... with layout.content: - with vuetify.VRow(align="center", classes="mt-4"): + with GridLayout(columns=2, gap="0.25em"): InputField(v_model="settings.port") ``` @@ -380,20 +364,13 @@ In that fashion, the `InputField` seamlessly pulls information from your code\'s Sometimes, you may want to respond to UI validation errors beyond just marking a field as invalid (which happens automatically). In such cases, you can add a callback to the `new_bind` function. -4. Using callbacks with `new_bind` (`src/trame_with_pydantic/app/view_models/main.py`) (modify): +4. Using callbacks with `new_bind` (`src/trame_with_pydantic/app/view_models/main_view_model.py`) (modify): ```python class MainViewModel: def __init__(self, _, binding: BindingInterface): ... - self.settings_bind = binding.new_bind(self.settings, callback_after_update=self.process_settings_change) - - def process_settings_change(self, results: Dict[str, Any]) -> None: - if results["error"]: - print(f"error in fields {results['errored']}, model not changed") - else: - print(f"model fields updated: {results['updated']}") - + self.settings_bind = binding.new_bind(self.settings, callback_after_update=self.change_callback) ``` The function will receive a dictionary containing lists of updated or invalid fields. Note that if a validation error occurs, the model will not be updated, leading to a discrepancy between the values displayed in the UI and those in the model. @@ -427,4 +404,4 @@ In the GUI application, set the port to the default value if a user enters an in * **nova-galaxy documentation**: https://nova-application-development.readthedocs.io/projects/nova-galaxy/en/latest/ * **nova-trame documentation**: https://nova-application-development.readthedocs.io/projects/nova-trame/en/stable/ * **nova-mvvm documentation**: https://nova-application-development.readthedocs.io/projects/mvvm-lib/en/latest/ -* **Calvera documentation**: https://calvera-test.ornl.gov/docs/ \ No newline at end of file +* **NDIP documentation**: https://ndip-test.ornl.gov/docs/ \ No newline at end of file diff --git a/episodes/07-Advanced-Visualizations.md b/episodes/07-Advanced-Visualizations.md index f301cbd8..b39cb73b 100755 --- a/episodes/07-Advanced-Visualizations.md +++ b/episodes/07-Advanced-Visualizations.md @@ -38,11 +38,12 @@ The complete code for this episode is available in the `code/episode_7` director Let\'s start by setting up a new application from the template. When answering the `copier` questions, make sure you select "no" for installing Mantid and set up a Trame-based, multi-tab view based on MVVM. ```bash -copier copy https://code.ornl.gov/ndip/project-templates/nova-application-template.git viz_tutorial +copier copy https://github.com/nova-sdk/nova-application-template viz_tutorial ``` -* **What kind of application are you creating?** - > Enter `Nova Application` +* **What kind of application are you creating?** + + > Select `Nova Application` * **What is your project name?** @@ -55,26 +56,22 @@ copier copy https://code.ornl.gov/ndip/project-templates/nova-application-templa > Press enter to accept the default. -* **Do you want to install Mantid for your project?** - - > Enter `no` - -* ** Are you developing a GUI application using MVVM pattern?** +* **Which category will your tool belong to?** - > Enter `yes` + > Select any option -* ** Which library will you use?** +* **Which GUI library will you use?** > Select `Trame` -* **Do you want a template with multiple tabs? +* **Do you want a template with multiple tabs?** > Enter `yes` ```bash cd viz_tutorial -poetry install -poetry run app +pixi install +pixi run app ``` ## Plotly (2D) @@ -82,7 +79,7 @@ poetry run app Trame provides a library called [trame-plotly](https://github.com/Kitware/trame-plotly) for connecting Trame and [Plotly](https://plotly.com/python/). You can install it with: ```bash -poetry add pandas plotly trame-plotly +pixi add --pypi pandas plotly trame-plotly ``` The pandas install is only necessary for loading example data from Plotly, which we'll be doing in this tutorial. @@ -101,7 +98,7 @@ from nova.trame.view.components import InputField from nova.trame.view.layouts import GridLayout, HBoxLayout from trame.widgets import plotly -from ..view_models.main import MainViewModel +from ..view_models.main_view_model import MainViewModel ``` * **Class Definition**: The view model connections allow us to connect the controls we will define in create_ui() to the server and update the Plotly chart after a control is changed. @@ -116,8 +113,7 @@ class PlotlyView: self.view_model.plotly_figure_bind.connect(self.update_figure) self.create_ui() - - self.view_model.update_plotly_figure() + self.update_figure() ``` * **Controls**: These controls will dynamically update the Plotly chart. @@ -138,7 +134,7 @@ class PlotlyView: * **Chart Definition**: Here, we use the imported Trame widget for Plotly to define the chart. This widget includes an `update` method that allows us to change the content after the initial rendering. ```python - with HBoxLayout(halign="center", height="50vh"): + with HBoxLayout(stretch=True): self.figure = plotly.Figure() def update_figure(self, figure: go.Figure) -> None: @@ -237,12 +233,8 @@ from ..views.plotly import PlotlyView ```python def create_ui(self) -> None: - with vuetify.VForm(ref="form") as self.f: - with vuetify.VContainer(classes="pa-0", fluid=True): - with vuetify.VCard(): - with vuetify.VWindow(v_model="active_tab"): - with vuetify.VWindowItem(value=1): - PlotlyView(self.view_model) + with VBoxLayout(v_show="view_state.active_tab == 0", stretch=True): + PlotlyView(self.view_model) ``` And add the corresponding import: @@ -253,13 +245,14 @@ We also need to update the tabs to show an option for the Plotly view. ```python def create_ui(self) -> None: - with vuetify.VTabs(v_model=("active_tab", 0), classes="pl-5"): - vuetify.VTab("Plotly", value=1) + with client.DeepReactive("view_state"): + with vuetify.VTabs(v_model="view_state.active_tab", classes="pl-5"): + vuetify.VTab("Plotly", value=0) ``` Finally, we'll need to update the view model to bind our new classes. -**5. `src/viz_examples/app/view_models/main.py` (Modify):** +**5. `src/viz_examples/app/view_models/main_view_model.py` (Modify):** * **Import `PlotlyConfig`** @@ -297,7 +290,7 @@ Now, if you run the application you should see the following in the Plotly tab: One of Trame\'s core features is that it has direct integration with VTK for building 3D visualizations. Learning VTK from scratch is non-trivial, however, so we recommend that you work with PyVista. PyVista serves as a more developer-friendly wrapper around VTK, allowing you to build your visualizations with a simpler, more intuitive API. To get started, you will need to install the Python package. ```bash -poetry add pyvista trame-vtk +pixi add --pypi pyvista trame-vtk ``` PyVista contains built-in Trame support, but we still need to install the Trame widget for VTK that PyVista will use internally. @@ -319,7 +312,7 @@ from nova.trame.view.layouts import GridLayout, HBoxLayout from pyvista.trame.ui import plotter_ui from trame.widgets import vuetify3 as vuetify -from ..view_models.main import MainViewModel +from ..view_models.main_view_model import MainViewModel ``` * **Class Definition:** The `Plotter` object is PyVista\'s main entry point. It will allow you to add meshes and volumes with the properties you\'ve specified. @@ -347,14 +340,10 @@ class PyVistaView: def create_ui(self) -> None: vuetify.VCardTitle("PyVista") with GridLayout(columns=5, classes="mb-2", valign="center"): - InputField( - v_model="pyvista_config.colormap", column_span=2, type="select" - ) - InputField( - v_model="pyvista_config.opacity", column_span=2, type="select" - ) + InputField(v_model="pyvista_config.colormap", column_span=2, type="select") + InputField(v_model="pyvista_config.opacity", column_span=2, type="select") vuetify.VBtn("Render", click=self.update) - with HBoxLayout(halign="center", height="50vh"): + with HBoxLayout(stretch=True): plotter_ui(self.plotter) def update(self, _: Any = None) -> None: @@ -426,33 +415,30 @@ This is very similar to the Plotly setup. * **Import `PyVistaView`** ```python -from ..views.pyvista import PyVistaView +from .pyvista import PyVistaView ``` * **Update `create_ui`** ```python def create_ui(self) -> None: - with vuetify.VForm(ref="form") as self.f: - with vuetify.VContainer(classes="pa-0", fluid=True): - with vuetify.VCard(): - with vuetify.VWindow(v_model="active_tab"): - with vuetify.VWindowItem(value=1): - PlotlyView(self.view_model) - with vuetify.VWindowItem(value=2): - PyVistaView(self.view_model) + with VBoxLayout(v_show="view_state.active_tab == 0", stretch=True): + PlotlyView(self.view_model) + with VBoxLayout(v_show="view_state.active_tab == 1", stretch=True): + PyVistaView(self.view_model) ``` **9. `src/viz_examples/app/views/tabs_panel.py` (Modify):** ```python def create_ui(self) -> None: - with vuetify.VTabs(v_model=("active_tab", 0), classes="pl-5"): - vuetify.VTab("Plotly", value=1) - vuetify.VTab("PyVista", value=2) + with client.DeepReactive("view_state"): + with vuetify.VTabs(v_model="view_state.active_tab", classes="pl-5"): + vuetify.VTab("Plotly", value=0) + vuetify.VTab("PyVista", value=1) ``` -**10. `src/viz_examples/app/view_models/main.py` (Modify):** +**10. `src/viz_examples/app/view_models/main_view_model.py` (Modify):** * **Import `PyVistaConfig`** @@ -492,13 +478,9 @@ Now, if you run the application you should see the following in the PyVista tab: If you have prior experience with VTK then you may prefer to work with it directly. You can get started with it by installing the Python VTK bindings and the Trame widget for VTK. ```bash -poetry add trame-vtk vtk==9.3.1 +pixi add --pypi trame-vtk vtk ``` -::::::::::::::::::::::::: callout -PyVista isn't compatible with VTK 9.4, yet. If you are not using PyVista, there is no need to specify the VTK version like this. -::::::::::::::::::::::::::::::::: - Once more, let's setup a view and model. **11. `VTKView` View Class (`src/viz_examples/app/views/vtk.py`):** @@ -514,7 +496,7 @@ from trame.widgets import vtk as vtkw from trame.widgets import vuetify3 as vuetify from vtkmodules.vtkRenderingCore import vtkRenderer, vtkRenderWindow, vtkRenderWindowInteractor, vtkVolume -from ..view_models.main import MainViewModel +from ..view_models.main_view_model import MainViewModel ``` * **Initialization:** Here we define the boiler plate for the interactive VTK window. As with PyVista, setting off-screen rendering to on is necessary when working with Trame. @@ -550,8 +532,7 @@ class VTKView: ```python def create_ui(self) -> None: vuetify.VCardTitle("VTK") - - with HBoxLayout(halign="center", height="50vh"): + with HBoxLayout(stretch=True): self.view = vtkw.VtkRemoteView(self.render_window, interactive_ratio=1) def render(self) -> None: @@ -706,29 +687,26 @@ from ..views.vtk import VTKView ```python def create_ui(self) -> None: - with vuetify.VForm(ref="form") as self.f: - with vuetify.VContainer(classes="pa-0", fluid=True): - with vuetify.VCard(): - with vuetify.VWindow(v_model="active_tab"): - with vuetify.VWindowItem(value=1): - PlotlyView(self.view_model) - with vuetify.VWindowItem(value=2): - PyVistaView(self.view_model) - with vuetify.VWindowItem(value=3): - VTKView(self.view_model) + with VBoxLayout(v_show="view_state.active_tab == 0", stretch=True): + PlotlyView(self.view_model) + with VBoxLayout(v_show="view_state.active_tab == 1", stretch=True): + PyVistaView(self.view_model) + with VBoxLayout(v_show="view_state.active_tab == 2", stretch=True): + VTKView(self.view_model) ``` **14. `src/viz_examples/app/views/tabs_panel.py` (Modify):** ```python def create_ui(self) -> None: - with vuetify.VTabs(v_model=("active_tab", 0), classes="pl-5"): - vuetify.VTab("Plotly", value=1) - vuetify.VTab("PyVista", value=2) - vuetify.VTab("VTK", value=3) + with client.DeepReactive("view_state"): + with vuetify.VTabs(v_model="view_state.active_tab", classes="pl-5"): + vuetify.VTab("Plotly", value=0) + vuetify.VTab("PyVista", value=1) + vuetify.VTab("VTK", value=2) ``` -**15. `src/viz_examples/app/view_models/main.py` (Modify):** +**15. `src/viz_examples/app/view_models/main_view_model.py` (Modify):** * **Import `VTKConfig`** @@ -788,7 +766,7 @@ We didn\'t look at `VTKConfig.init_lut` or `VTKConfig.init_pwf` during the tutor * **Trame/PyVista Integration Tutorial**: https://tutorial.pyvista.org/tutorial/09_trame/index.html * **VTK Python Documentation**: https://docs.vtk.org/en/latest/api/python.html * **Trame Tutorial**: https://kitware.github.io/trame/guide/tutorial/ -* **Calvera documentation**: https://calvera-test.ornl.gov/docs/ +* **NDIP documentation**: https://ndip-test.ornl.gov/docs/ :::::::::::::::::::::::::::::::::::::::: keypoints - Trame integrates well with Plotly for building 2D charts. diff --git a/episodes/08-Next-Steps.md b/episodes/08-Next-Steps.md index d9b0e1ae..d3e65b21 100755 --- a/episodes/08-Next-Steps.md +++ b/episodes/08-Next-Steps.md @@ -55,7 +55,7 @@ These topics are beyond the scope of this introductory tutorial, but the NDIP te * **nova-galaxy documentation**: https://nova-application-development.readthedocs.io/projects/nova-galaxy/en/latest/ * **nova-trame documentation**: https://nova-application-development.readthedocs.io/projects/nova-trame/en/stable/ * **nova-mvvm documentation**: https://nova-application-development.readthedocs.io/projects/mvvm-lib/en/latest/ -* **Calvera documentation**: https://calvera-test.ornl.gov/docs/ +* **NDIP documentation**: https://ndip-test.ornl.gov/docs/ By following this tutorial, you've learned how to create and deploy a NOVA application to the NDIP platform. You can now build on this foundation to create more complex scientific applications that can be easily shared with the wider scientific community.