removing array invocations where they occur because they causes crashes with a local executor

nrminor · nrminor · commit 3e73aa70dfc4 · 2025-05-13T18:19:46.000-05:00
diff --git a/modules/bedtools.nf b/modules/bedtools.nf
@@ -2,8 +2,6 @@ process GET_PRIMER_SEQS {
 
     /* */
 
-    array 1000
-
 	errorStrategy { task.attempt < 3 ? 'retry' : 'ignore' }
 	maxRetries 2
 
diff --git a/modules/chopper.nf b/modules/chopper.nf
@@ -6,7 +6,6 @@ process FILTER_WITH_CHOPPER {
     errorStrategy { task.attempt < 3 ? 'retry' : 'ignore' }
     maxRetries 2
 
-    array 1000
     cpus 4
 
     input:
diff --git a/modules/primer_patterns.nf b/modules/primer_patterns.nf
@@ -2,8 +2,6 @@ process GET_PRIMER_PATTERNS {
 
     /* */
 
-    array 1000
-
 	errorStrategy { task.attempt < 3 ? 'retry' : 'ignore' }
 	maxRetries 2
 
diff --git a/modules/seqkit.nf b/modules/seqkit.nf
@@ -5,7 +5,6 @@ process SORT_AND_COMPRESS_TO_FASTA {
 	errorStrategy { task.attempt < 3 ? 'retry' : 'ignore' }
 	maxRetries 2
 
-    array 1000
 	cpus 3
 
     input:
@@ -54,7 +53,6 @@ process FIND_COMPLETE_AMPLICONS {
 	errorStrategy { task.attempt < 3 ? 'retry' : 'ignore' }
 	maxRetries 2
 
-    array 1000
 	cpus 3
 
     input:
