version bump plus some new CI to auto-push a new image to docker hub with each release tag

Author: nrminor

.github/workflows/release.yml

@@ -150,3 +150,36 @@ jobs:
           echo "🔗 Release URL: https://github.com/${{ github.repository }}/releases/tag/${{ steps.version.outputs.tag }}"
           echo ""
           echo "📦 Source archives are automatically attached by GitHub."
+
+  docker:
+    name: Push Docker Image
+    runs-on: ubuntu-latest
+    needs: release
+    if: ${{ !contains(github.ref, '-') }}
+
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Extract version from tag
+        id: version
+        run: |
+          VERSION=${GITHUB_REF#refs/tags/v}
+          echo "version=$VERSION" >> $GITHUB_OUTPUT
+
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v3
+
+      - name: Log in to Docker Hub
+        uses: docker/login-action@v3
+        with:
+          username: ${{ secrets.DOCKERHUB_USERNAME }}
+          password: ${{ secrets.DOCKERHUB_TOKEN }}
+
+      - name: Build and push
+        uses: docker/build-push-action@v6
+        with:
+          context: .
+          file: ./Containerfile
+          push: true
+          tags: nrminor/oneroof:${{ steps.version.outputs.version }}

Containerfile

@@ -79,4 +79,5 @@ COPY bin/find_and_trim_amplicons.rs $HOME/bin/find_and_trim_amplicons.rs
 RUN cd $HOME && \
     export PATH="$HOME/.pixi/envs/default/bin:$PATH" && \
     RUSTFLAGS="-C target-cpu=native" cargo build --release && \
-    cp $HOME/target/release/find_and_trim_amplicons $HOME/.pixi/envs/default/bin/
+    cp $HOME/target/release/find_and_trim_amplicons $HOME/.pixi/envs/default/bin/ && \
+    rm -rf $HOME/target

main.nf

@@ -26,7 +26,7 @@ workflow {
         alignment and variant-calling, variant-effect annotation, consensus
         sequence calling, quality reporting, and phylogenetic tree-building, all
         under "one roof."
-        (version 0.1.0)
+        (version 2.2.1)
         =========================================================================
         """
         .stripIndent()

nextflow.config

@@ -261,7 +261,7 @@ profiles {
 		singularity.enabled = false
 		conda.enabled       = false
 
-		process.container   = "nrminor/dorado-and-friends:v0.2.3"
+		process.container   = "nrminor/oneroof:2.2.1"
 	}
 
 	docker {
@@ -270,7 +270,7 @@ profiles {
 		singularity.enabled = false
 		conda.enabled       = false
 
-		process.container   = "nrminor/dorado-and-friends:v0.2.3"
+		process.container   = "nrminor/oneroof:2.2.1"
 	}
 
 	singularity {
@@ -279,7 +279,7 @@ profiles {
 		docker.enabled      = false
 		conda.enabled       = false
 
-		process.container   = "docker://nrminor/dorado-and-friends:v0.2.3"
+		process.container   = "docker://nrminor/oneroof:2.2.1"
 	}
 
 	apptainer {

pixi.lock

@@ -1,6 +1,6 @@
 [project]
 name = "oneroof"
-version = "2.0.0"
+version = "2.2.1"
 description = "Base-, Variant-, and Consensus-calling under One Proverbial Roof."
 authors = [
   { name = "Nicholas R. Minor", email = "nrminor@wisc.edu" },