Radically expand the amount of graphics generated for visual exploration of oneroof results

[nrminor]

oneroof, at its core, implements an exceptionally pedestrian sequence of operations: raw read QC, alignment with minimap2, variant and consensus calling with ivar and bcftools, etc. The first feature that differentiates it from other pipelines is that it can perform Nanopore basecalling in addition to the above. The second distinguishing feature is its unusually rigorous handling of primers/amplicons.

I'd like the third distinguishing feature to be how it empowers users to visually explore their data. A few ideas to that end:

• expand the generated multiQC report to include as many tools as possible from the Venn overlap between what it supports and what oneroof runs.
• output more graphics throughout. As an example, I'm particularly interested in NanoPack tools like kyber and cramino.
• What about outputting an IGV project? Or even a Geneious project if a local installation is available?
• Implementing a few visualizations with figeno could be fun too.