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‎content/basics/customize/integration.en.md‎

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Standard workflow when connecting Weasis to a PACS, RIS, EMR, EPR or any web interface:
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{{< svg "static/images/weasis-pacs-connector.svg" >}}
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{{< svg-inline "static/images/weasis-pacs-connector.svg" >}}
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{{% notice note %}}
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The schema above shows that the queries to the PACS are made at the same time as the viewer starts. This makes it possible to optimize the launch by simultaneously launching weasis and building the manifest.
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{{% /notice %}}

‎content/tutorials/build-ko-pr.en.md‎

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![Build KO](/tuto/ko-actions.jpg?classes=shadow&width=700px)
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- Other actions:
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- Apply a KO (2) {{< svg "static/tuto/icon/keyImage.svg" >}}
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- Apply a KO (2) {{< svg-inline "static/tuto/icon/keyImage.svg" >}}
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- Filter to obtain only the key images defined in the selected KO (4). This means only key images will be visible when scrolling into a series.
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- Create a new KO (or based on another one) or delete KO (only the ones created by Weasis) (5)
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### Presentation State (PR or GSPS)
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- Apply PR loaded from a DICOM file (1) {{< svg "static/tuto/icon/imagePresentation.svg" >}}: Since {{% badge title="Version" %}}2.6.0{{% /badge %}} PRs are not applied to the image by default (requires to select the right icon (2) over the image). In order to apply the most recent PR by default, change it from the main menu _File > Preferences (Alt + P)_ and check "Apply by default the most recent Presentation State", or in the [default preferences](../../basics/customize/preferences/).
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- Apply PR loaded from a DICOM file (1) {{< svg-inline "static/tuto/icon/imagePresentation.svg" >}}: Since {{% badge title="Version" %}}2.6.0{{% /badge %}} PRs are not applied to the image by default (requires to select the right icon (2) over the image). In order to apply the most recent PR by default, change it from the main menu _File > Preferences (Alt + P)_ and check "Apply by default the most recent Presentation State", or in the [default preferences](../../basics/customize/preferences/).
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- Create a new PR: Any type of annotations (Drawings and Measurements) can be exported in a DICOM Presentation State. Image presentation actions (zoom, calibration, W/L, LUT...) are not yet possible to export into PR.
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![Build PR](/tuto/pr-actions.jpg?classes=shadow&width=700px)
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<br>

‎content/tutorials/dicom-2d-viewer.en.md‎

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keywords: [ "viewer 2D", "dicom data", "dicom viewer", "free dicom viewer", "open source dicom viewer" ]
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---
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## <center>Displaying DICOM images {{< svg "static/tuto/icon/view2d.svg" >}}</center>
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## <center>Displaying DICOM images {{< svg-inline "static/tuto/icon/view2d.svg" >}}</center>
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The 2D viewer is the default viewer when opening a DICOM series containing images.
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### Open the 2D viewer
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The 2D view can be opened with {{< svg "static/tuto/icon/view2d.svg" >}} in the toolbar or by right-clicking on the thumbnail in the [DICOM explorer](../dicom-explorer/).
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The 2D view can be opened with {{< svg-inline "static/tuto/icon/view2d.svg" >}} in the toolbar or by right-clicking on the thumbnail in the [DICOM explorer](../dicom-explorer/).
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![DICOM 2DViewer](/tuto/dicom-viewer2d.jpg?classes=shadow&width=780px)
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<br>
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When dragging, accelerate the action by pressing the _Ctrl_ key and _Ctrl + Shift_ to accelerate more.
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{{% /notice %}}
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* {{< svg "static/tuto/icon/layout.svg" >}} _Default layout:_ Change the layout of the view. [DICOM Information](../tags) and [Histogram](../histogram) are specific layouts where information is automatically updated when scrolling through the series.
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* {{< svg-inline "static/tuto/icon/layout.svg" >}} _Default layout:_ Change the layout of the view. [DICOM Information](../tags) and [Histogram](../histogram) are specific layouts where information is automatically updated when scrolling through the series.
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* Synchronize: The synchronization feature lets you apply the same settings to other images.
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* _None:_ No synchronization is applied between series.
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* _Default Stack:_ When selected, the layout is synchronized (window/level, scrolling, zoom) only with the series sharing the same Frame of Reference UID (0020,0052). This is the default behavior.
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* _Default Tile:_ When selected, the layout is applied in tiled mode (image mosaic of the current series) and is synchronized (window/level, scrolling, zoom) with the image of the same series.
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* {{< svg "static/tuto/icon/reset.svg" >}} _Reset:_ Reset the image rendering (see [below](#reset)). _Escape_ key to select the action.
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* {{< svg-inline "static/tuto/icon/reset.svg" >}} _Reset:_ Reset the image rendering (see [below](#reset)). _Escape_ key to select the action.
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#### Toolbars available in the DICOM 2D viewer
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* [DICOM Import](../dicom-import/#from-weasis-menu-or-toolbar)
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### Viewer's tools
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Here is a list of the tools which are associated to the DICOM 2D viewer.
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The mini-tool is always visible and the other tools are displayed by clicking on the vertical button. The normalize button {{< svg "static/tuto/icon/normalize.svg" >}} allows you to insert the panel into the main layout. Otherwise, the panel is displayed as a popup window with the pin option {{< svg "static/tuto/icon/holdon.svg" >}} (which is not recommended, as it hides other panels).
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The mini-tool is always visible and the other tools are displayed by clicking on the vertical button. The normalize button {{< svg-inline "static/tuto/icon/normalize.svg" >}} allows you to insert the panel into the main layout. Otherwise, the panel is displayed as a popup window with the pin option {{< svg-inline "static/tuto/icon/holdon.svg" >}} (which is not recommended, as it hides other panels).
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#### Mini-tool {{% badge style="red" %}}B{{% /badge %}} {#mini-tool}
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Allows you by default to scroll through the images of the selected series (surrounded by an orange line). From the combobox at the top, the mini-tool can also be configured to change the zoom or the rotation of the image.
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Allows you to zoom, rotate and flip the image. [Zoom](../zoom) and rotation can also be configured with the [mini-tool](#mini-tool) or the [mouse actions](#toolbars).
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##### Cine
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The _Cine start_ button {{< svg "static/tuto/icon/execute.svg" >}} lets you scroll through the images in a series at a certain speed (frame per second). The speed values comes from the DICOM file if exists. The cine options can also be changed from the context menu.
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The _Cine start_ button {{< svg-inline "static/tuto/icon/execute.svg" >}} lets you scroll through the images in a series at a certain speed (frame per second). The speed values comes from the DICOM file if exists. The cine options can also be changed from the context menu.
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* Click on _Cine stop_ button {{< svg "static/tuto/icon/suspend.svg" >}} to end the animation.
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* Click on _Loop Sweep_ toggle button {{< svg "static/tuto/icon/loop.svg" >}} to change the cine mode: looping vs sweeping.
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* Click on _Cine stop_ button {{< svg-inline "static/tuto/icon/suspend.svg" >}} to end the animation.
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* Click on _Loop Sweep_ toggle button {{< svg-inline "static/tuto/icon/loop.svg" >}} to change the cine mode: looping vs sweeping.
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{{% notice note %}}
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When the cine is active, the series which are synchronized are also animated. The cine is also applied to other series when they are selected until the _Cine stop_ button is clicked.
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{{% /notice %}}
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##### Reset
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It allows you to return to the default image rendering for all or specific parameters. Also available from the toolbar button {{< svg "static/tuto/icon/reset.svg" >}} or from the context menu.
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It allows you to return to the default image rendering for all or specific parameters. Also available from the toolbar button {{< svg-inline "static/tuto/icon/reset.svg" >}} or from the context menu.
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#### [Draw & Measure](../draw-measure/) {{% badge style="red" %}}E{{% /badge %}} {#draw-measure}
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#### Other
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* _Apply Window/Level on color images:_ When checked, the window/level is applied on the RGB channels of the image. Otherwise, the window/level has no effect when unchecked.
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* _Inverse level direction:_ When checked, the level direction with mouse actions is inverted (dragging down will increase the brightness) according to the [Basic Image Review profile](https://wiki.ihe.net/index.php?title=Basic_Image_Review). Otherwise, dragging down will decrease the brightness when unchecked.
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* _Apply by default the most recent Presentation State:_ When checked, the most recent [Presentation State](../build-ko-pr/#presentation-state-pr-or-gsps) Object is applied on the related image. Otherwise, it is required to select it from {{< svg "static/tuto/icon/imagePresentation.svg" >}}.
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* _Apply by default the most recent Presentation State:_ When checked, the most recent [Presentation State](../build-ko-pr/#presentation-state-pr-or-gsps) Object is applied on the related image. Otherwise, it is required to select it from {{< svg-inline "static/tuto/icon/imagePresentation.svg" >}}.
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* _Overlay color:_ change the color and the opacity of DICOM overlay. The default color is white. The opacity can be changed from the transparency or alpha slider of the different color models in the color picker.

‎content/tutorials/dicom-3d-viewer.en.md‎

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keywords: [ "viewer 3D", "volume rendering", "ray casting", "3D rendering", "dicom viewer", "free dicom viewer", "open source dicom viewer" ]
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## <center>Displaying volume data {{< svg "static/tuto/icon/volume.svg" >}}</center>
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## <center>Displaying volume data {{< svg-inline "static/tuto/icon/volume.svg" >}}</center>
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Since Weasis {{% badge title="Version" %}}4.1.0{{% /badge %}} the 3D viewer allows displaying volumetric renderings with different options for adjusting the pseudo colors, the transparency, the shadows and the lighting according to the type of exam.
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{{% /notice %}}
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### Open the 3D viewer
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The 3D view can be opened with {{< svg "static/tuto/icon/volume.svg" >}} in the toolbar or by right-clicking on the thumbnail in the [DICOM explorer](../dicom-explorer/).
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The 3D view can be opened with {{< svg-inline "static/tuto/icon/volume.svg" >}} in the toolbar or by right-clicking on the thumbnail in the [DICOM explorer](../dicom-explorer/).
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Try to load a volume dataset (Medical Demos from data.kitware.com)
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{{< launch >}}
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### Toolbar {{% badge style="red" %}}A{{% /badge %}} {#toolbar}
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* {{< svg "static/tuto/icon/loadVolume.svg" >}} Allows you to fully reload the volume
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* {{< svg "static/tuto/icon/orthographic.svg" >}} The orthographic projection maintains parallel lines unlike the perspective projection that provides a perception of depth. The default mode is the perspective projection.
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* {{< svg "static/tuto/icon/volumeSettings.svg" >}} Opens the [3D preferences](#preferences)
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* {{< svg-inline "static/tuto/icon/loadVolume.svg" >}} Allows you to fully reload the volume
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* {{< svg-inline "static/tuto/icon/orthographic.svg" >}} The orthographic projection maintains parallel lines unlike the perspective projection that provides a perception of depth. The default mode is the perspective projection.
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* {{< svg-inline "static/tuto/icon/volumeSettings.svg" >}} Opens the [3D preferences](#preferences)
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For other buttons see below.
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### 3D Rendering Tools
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This tab contains all the tools to modify the volume rendering. If you want to return to the original settings, just click on the toolbar button {{< svg "static/tuto/icon/reset.svg" >}} or from the context menu.
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This tab contains all the tools to modify the volume rendering. If you want to return to the original settings, just click on the toolbar button {{< svg-inline "static/tuto/icon/reset.svg" >}} or from the context menu.
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#### Windowing and Rendering {{% badge style="red" %}}B{{% /badge %}} {#windowing}
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* _Window:_ The width of a range of voxels values mapped to a specific range of display values.
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* _Level:_ The center of the range defined by Window.
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* {{< svg "static/tuto/icon/winLevel.svg" >}} _Preset:_ Specific values of Window and level. _Auto Level [Image]_ is the default value when changing a LUT and provides the best visual appearance of a Volume LUT.
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* {{< svg-inline "static/tuto/icon/winLevel.svg" >}} _Preset:_ Specific values of Window and level. _Auto Level [Image]_ is the default value when changing a LUT and provides the best visual appearance of a Volume LUT.
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* _LUT Shape:_ The mapping (transfer function) between the input values and the display values can be linear, sigmoid and logarithmic. Default value is linear.
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* {{< svg "static/tuto/icon/lut.svg" >}} _LUT (Volume LUT):_ A Volume Lookup Table (LUT) is a 3D LUT used to map the grayscale values of a volume dataset to color, opacity and lighting values for visualization. Choosing a LUT from the toolbar or the contextual menu is easier because the LUTs are displayed in an order according to the modality and with a preview.
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* {{< svg "static/tuto/icon/inverseLut.svg" >}} allows you to invert the LUT.
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* {{< svg-inline "static/tuto/icon/lut.svg" >}} _LUT (Volume LUT):_ A Volume Lookup Table (LUT) is a 3D LUT used to map the grayscale values of a volume dataset to color, opacity and lighting values for visualization. Choosing a LUT from the toolbar or the contextual menu is easier because the LUTs are displayed in an order according to the modality and with a preview.
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* {{< svg-inline "static/tuto/icon/inverseLut.svg" >}} allows you to invert the LUT.
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#### Volume Rendering {{% badge style="red" %}}C{{% /badge %}} {#volume-rendering}
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#### 3D Viewer
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* {{< svg "static/tuto/icon/layout.svg" >}} _Default layout:_ The preferred layout used when opening the 3D viewer
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* {{< svg-inline "static/tuto/icon/layout.svg" >}} _Default layout:_ The preferred layout used when opening the 3D viewer
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* _Max 3D texture size:_ The maximum size of the volume according to X/Y (width and height of images) and according to Z (number of images in the stack composing the volume)
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{{% notice note %}}

‎content/tutorials/dicom-audio.en.md‎

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keywords: [ "dicom au", "au", "audio", "dicom viewer", "open source dicom viewer" ]
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## <center>Playing DICOM AU data {{< svg "static/tuto/icon/audio.svg" >}}</center>
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## <center>Playing DICOM AU data {{< svg-inline "static/tuto/icon/audio.svg" >}}</center>
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This player is used to play audio data defined by the DICOM AU standard.
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* {{< svg-inline "static/tuto/icon/metadata.svg" >}} Show the DICOM metadata of the DICOM AU
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### Play {{% badge style="red" %}}B{{% /badge %}} {#play}
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The _Play_ button allows you to play and pause. The slicer allows you to navigate through the audio file and display the position in seconds.

‎content/tutorials/dicom-ecg.en.md‎

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keywords: [ "dicom ecg", "ecg", "electrocardiography", "dicom viewer", "open source dicom viewer" ]
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## <center>Displaying electrocardiography data {{< svg "static/tuto/icon/ecg.svg" >}}</center>
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## <center>Displaying electrocardiography data {{< svg-inline "static/tuto/icon/ecg.svg" >}}</center>
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The ECG viewer is used to display and analyze electrocardiogram (ECG) data in DICOM format obtained from different modalities, such as resting ECGs, ambulatory ECGs, and stress tests.
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<br>
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* {{< svg "static/tuto/icon/print.svg" >}} Allows you to print the ECG as it is displayed with some basic information (patient/study)
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* {{< svg "static/tuto/icon/metadata.svg" >}} Show the DICOM metadata of the ECG
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* {{< svg "static/tuto/icon/selectionDelete.svg" >}} Delete all the measurements (yellow areas in the image above), see [Markers](#markers)
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* {{< svg-inline "static/tuto/icon/print.svg" >}} Allows you to print the ECG as it is displayed with some basic information (patient/study)
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* {{< svg-inline "static/tuto/icon/metadata.svg" >}} Show the DICOM metadata of the ECG
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* {{< svg-inline "static/tuto/icon/selectionDelete.svg" >}} Delete all the measurements (yellow areas in the image above), see [Markers](#markers)
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### Zoom and Display Format {{% badge style="red" %}}B{{% /badge %}} {#zoom-and-display-format}
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The zoom is on several graphic components. The first combo box represents the time, the second represents the voltage, and the slider allows you to zoom in both directions while preserving the aspect ratio.

‎content/tutorials/dicom-export.en.md‎

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## <center>How to export DICOM files</center>
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### Exporting the selected view {{< svg "static/tuto/icon/exportImage.svg" >}} {#export-view}
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### Exporting the selected view {{< svg-inline "static/tuto/icon/exportImage.svg" >}} {#export-view}
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From the toolbar icon {{< svg-inline "static/tuto/icon/exportImage.svg" >}} or from the main menu _File > Export > Exporting view_ export the selected view either to the clipboard or to image file (PNG, TIF, JPG, JPEG2000).
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* DICOM Shutter: Apply the [DICOM shutters](https://dicom.nema.org/medical/Dicom/current/output/chtml/part03/sect_C.7.6.11.html) when checked
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### DICOM Export {{< svg "static/tuto/icon/exportDicom.svg" >}} {#dicom-exporting}
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### DICOM Export {{< svg-inline "static/tuto/icon/exportDicom.svg" >}} {#dicom-exporting}
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In order to open the DICOM export window click on toolbar icon {{< svg "static/tuto/icon/exportDicom.svg" >}} or from the main menu _File > Export > DICOM_
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In order to open the DICOM export window click on toolbar icon {{< svg-inline "static/tuto/icon/exportDicom.svg" >}} or from the main menu _File > Export > DICOM_
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#### Local Device
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![Export DICOM](/tuto/export-ko-pr.png?classes=shadow&width=500)

‎content/tutorials/dicom-rt.en.md‎

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## <center>Displaying radiotherapy information {{< svg "static/tuto/icon/rt.svg" >}}</center>
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## <center>Displaying radiotherapy information {{< svg-inline "static/tuto/icon/rt.svg" >}}</center>
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The _RT Tool_ appears on the right panel when a CT exam (when linked with DICOM STRUCT, PLAN and DOSE) is displayed. Since {{% badge title="Version" %}}4.1.0{{% /badge %}} a specific configuration in config.properties is no longer required.
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