Initial commit

Author: nuno-agostinho

Dockerfile

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+# SUPPA
+# Usage: python3 ${suppa}/suppa.py [SUBCOMMAND] [OPTIONS]
+# For instance, python3 suppa.py generateEvents
+
+FROM ubuntu:16.10
+MAINTAINER Nuno Agostinho <nunodanielagostinho@gmail.com>
+
+RUN apt-get update
+
+COPY get-pip.py .
+RUN apt-get install -y python3
+RUN python3 get-pip.py
+RUN rm get-pip.py
+
+RUN pip3 install --upgrade pip
+RUN pip3 install numpy
+RUN pip3 install scipy
+RUN pip3 install pandas
+RUN pip3 install statsmodels
+RUN pip3 install scikit-learn
+
+ENV SW=/root/software
+WORKDIR ${SW}
+
+ENV suppa_version=suppa-2.1
+ENV suppa=${SW}/${suppa_version}
+ADD ${suppa_version}.tar.bz2 ${SW}

README.md

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+# SUPPA (Docker)
+Docker to run splicing analysis using SUPPA
+
+## Available software
+- [SUPPA](https://github.com/comprna/SUPPA) 2.1 (run using `python3 ${suppa}/suppa.py`)
+- [python 3](https://python.org)
+
+## Maintainer
+[Nuno Agostinho](mailto:nunodanielagostinho@gmail.com) - [Nuno Morais Lab](http://imm.medicina.ulisboa.pt/group/compbio/), iMM (2017)