diff --git a/src/ontology/bdso-edit.owl b/src/ontology/bdso-edit.owl index 622f9c1a..c8aa4180 100644 --- a/src/ontology/bdso-edit.owl +++ b/src/ontology/bdso-edit.owl @@ -12,24 +12,26 @@ Ontology( Import() Import() Import() -Import() Import() Import() +Import() Annotation(dce:title "Brain Data Standards Cell Ontology") Annotation(dcterms:license ) Declaration(Class()) -Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) Declaration(ObjectProperty()) @@ -46,14 +48,15 @@ Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty(dce:contributor)) +Declaration(AnnotationProperty(dce:creator)) Declaration(AnnotationProperty(dce:description)) Declaration(AnnotationProperty(dce:title)) +Declaration(AnnotationProperty(dcterms:description)) Declaration(AnnotationProperty(dcterms:license)) -Declaration(AnnotationProperty(dcterms:title)) Declaration(AnnotationProperty(dcterms:provenance)) -Declaration(AnnotationProperty(dcterms:description)) -Declaration(AnnotationProperty(dcterms:subject)) Declaration(AnnotationProperty(dcterms:relation)) +Declaration(AnnotationProperty(dcterms:subject)) +Declaration(AnnotationProperty(dcterms:title)) ############################ # Annotation Properties ############################ @@ -129,18 +132,18 @@ AnnotationAssertion(rdfs:label "has # Classes ############################ -# Class: (basket morphology L2/3 pvalb-like sst GABAergic cortical interneuron (Mus musculus)) +# Class: (L4 intratelencephalic projecting glutamatergic neuron of the primary motor cortex) -AnnotationAssertion(Annotation( "PMID:33184512") "A L2/3 pvalb-like sst GABAergic cortical interneuron (Mus musculus) that has basket morphology.") -AnnotationAssertion(dce:contributor ) -AnnotationAssertion( "basket L2/3 PV-like SST (Mus)") -AnnotationAssertion(rdfs:label "basket morphology L2/3 pvalb-like sst GABAergic cortical interneuron (Mus musculus)") -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +AnnotationAssertion(Annotation( "PMID:33184512"^^xsd:string) "An intratelencephalic-projecting glutamatergic neuron that is located in the boundary between L2/3 and L5 of the primary motor cortex. These cells have diverse morphologies with some pyramidal and some stellate cells.") +AnnotationAssertion(dcterms:creator ) +AnnotationAssertion( "ILX:0770172") +AnnotationAssertion(Annotation( "PMID:25525751") rdfs:comment "The primary motor cortex are commonly held to lack layer 4, however this is currently controversial. These cells correspond to the quasi-layer 4 neurons found in a thin laminar zone at the L3/5A of the primary motor cortex that have been previously described.") +AnnotationAssertion(rdfs:label "L4 intratelencephalic projecting glutamatergic neuron of the primary motor cortex") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) # Class: (L2/3 pvalb-like sst GABAergic cortical interneuron (Mus musculus)) -AnnotationAssertion(Annotation( "PMID:33184512") "A sst GABAergic cortical interneuron transcriptomically between the sst and the pvalb families with a soma found in L2/3. Some L2/3 PV-like sst cells have Martinotti morphology while some have basket cell morphology. L2/3 PV-like sst cells have lower AP width and higher firing rate than typical Sst subclass cells. L2/3 PV-like sst cells have high maximum firing rate variability, with many classified as belonging to the pvalb subclass on the basis of electrophysiology.") +AnnotationAssertion(Annotation( "PMID:33184512"^^xsd:string) "A sst GABAergic cortical interneuron transcriptomically between the sst and the pvalb families with a soma found in L2/3. Some L2/3 PV-like sst cells have Martinotti morphology while some have basket cell morphology. L2/3 PV-like sst cells have lower AP width and higher firing rate than typical Sst subclass cells. L2/3 PV-like sst cells have high maximum firing rate variability, with many classified as belonging to the pvalb subclass on the basis of electrophysiology.") AnnotationAssertion(dce:contributor ) AnnotationAssertion( "L2/3 PV-like SST Mus") AnnotationAssertion(rdfs:label "L2/3 pvalb-like sst GABAergic cortical interneuron (Mus musculus)") @@ -151,17 +154,24 @@ SubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (basket morphology L2/3 pvalb-like sst GABAergic cortical interneuron (Mus musculus)) + +AnnotationAssertion(Annotation( "PMID:33184512"^^xsd:string) "A L2/3 pvalb-like sst GABAergic cortical interneuron (Mus musculus) that has basket morphology.") +AnnotationAssertion(dce:contributor ) +AnnotationAssertion( "basket L2/3 PV-like SST (Mus)") +AnnotationAssertion(rdfs:label "basket morphology L2/3 pvalb-like sst GABAergic cortical interneuron (Mus musculus)") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (Martinotti morphology L2/3 pvalb-like sst GABAergic cortical interneuron (Mus musculus)) -AnnotationAssertion(Annotation( "PMID:33184512") "A L2/3 pvalb-like sst GABAergic cortical interneuron (Mus musculus) that has Martinotti morphology.") +AnnotationAssertion(Annotation( "PMID:33184512"^^xsd:string) "A L2/3 pvalb-like sst GABAergic cortical interneuron (Mus musculus) that has Martinotti morphology.") AnnotationAssertion(dce:contributor ) AnnotationAssertion( "Martinotti L2/3 PV-like SST (Mus)") AnnotationAssertion(rdfs:label "Martinotti morphology L2/3 pvalb-like sst GABAergic cortical interneuron (Mus musculus)") SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: - AnnotationAssertion(rdfs:label "symbol") AnnotationAssertion(rdfs:label "has exemplar data")