Fix: Matching pyFV3 package specifications (NOAA-GFDL#132)

* Addition of metadata and configuration information to pyproject.toml, and minimal setup.py

* Linting

* Adding conditional statement for checking of local clone of dependency

* Linting

* Reverting back to using find_pkg in setup.py

* Updating author in pyproject.toml

* Intermediate steps for refactor of pyFV3 and pySHiELD

* Bringing in changes from PR 129

Co-authored-by: Janice Kim <janice.kim@noaa.gov>
Co-authored-by: Frank Malatino <142349306+fmalatino@users.noreply.github.com>

* Confirming tests

Co-authored-by: Janice Kim <janice.kim@noaa.gov>
Co-authored-by: Frank Malatino <142349306+fmalatino@users.noreply.github.com>

* Changing backend of barolinic_c48_no_out.yaml

* Adding baroclinic_c48_no_out.yaml to excluded configs in test_example_configs

* Adding baroclinic_c48_no_out.yaml to workflow

* Adding 54 ranks to be used in workflow

* Reducing number of ranks for workflow run to 6

* Removing references to support for Python 3.9-3.10 in pyproject.toml

* Removing more references to old Python version support

* Removing setup.cfg

* Setting black target version to Python 3.11

* New linting tools

* Updating versions of tools contained in pyproject.toml and pre-commit-config

* Reverting changes to fv_dynamics thresholds

* Adding Flake8-pyproject as an additional dependency in pre-commit-config.yaml

* Updating configs in examples/notebooks to use 'baroclinic_instability' over 'baroclinic'

* Testing bumping mpi4py to 4.1

* Testing still

* Removing version specification for mpi4py

* Matching pyFV3 metadata

---------

Co-authored-by: Janice Kim <janice.kim@noaa.gov>

Author: fmalatino

.pre-commit-config.yaml

@@ -6,7 +6,6 @@ repos:
     rev: 25.1.0
     hooks:
       - id: black
-        additional_dependencies: ["click==8.0.4"]
 
   - repo: https://github.com/pre-commit/mirrors-isort
     rev: v5.10.1
@@ -30,22 +29,14 @@ repos:
       - id: check-yaml
       - id: end-of-file-fixer
       - id: trailing-whitespace
+
   - repo: https://github.com/pycqa/flake8
     rev: 7.3.0
     hooks:
       - id: flake8
         name: flake8
         language_version: python3
         additional_dependencies: [Flake8-pyproject]
-        exclude: |
-          (?x)^(
-          .*/__init__.py |
-          )$
-      - id: flake8
-        name: flake8 __init__.py files
-        files: "__init__.py"
-      # ignore unused import error in __init__.py files
-        additional_dependencies: [Flake8-pyproject]
 
   - repo: https://github.com/macisamuele/language-formatters-pre-commit-hooks
     rev: v2.15.0

pace/__init__.py

@@ -10,7 +10,7 @@
 )
 from .diagnostics import Diagnostics, DiagnosticsConfig
 from .driver import Driver, DriverConfig, RestartConfig
-from .grid import GeneratedGridConfig, SerialboxGridConfig
+from .grid import ExternalNetcdfGridConfig, GeneratedGridConfig, SerialboxGridConfig
 from .initialization import (
     AnalyticInit,
     FortranRestartInit,
@@ -23,3 +23,28 @@
 
 
 __version__ = "0.2.0"
+
+__all__ = [
+    "CreatesComm",
+    "CreatesCommSelector",
+    "MPICommConfig",
+    "NullCommConfig",
+    "ReaderCommConfig",
+    "WriterCommConfig",
+    "Diagnostics",
+    "DiagnosticsConfig",
+    "Driver",
+    "DriverConfig",
+    "RestartConfig",
+    "GeneratedGridConfig",
+    "SerialboxGridConfig",
+    "ExternalNetcdfGridConfig",
+    "AnalyticInit",
+    "FortranRestartInit",
+    "PredefinedStateInit",
+    "RestartInit",
+    "Registry",
+    "SafetyChecker",
+    "DriverState",
+    "TendencyState",
+]