STY: Black

Author: effigies

nipype/algorithms/confounds.py

@@ -919,9 +919,7 @@ class TSNR(BaseInterface):
     def _run_interface(self, runtime):
         img = nb.load(self.inputs.in_file[0], mmap=NUMPY_MMAP)
         header = img.header.copy()
-        vollist = [
-            nb.load(filename) for filename in self.inputs.in_file
-        ]
+        vollist = [nb.load(filename) for filename in self.inputs.in_file]
         data = np.concatenate(
             [
                 vol.get_fdata(dtype=np.float32).reshape(vol.shape[:3] + (-1,))

nipype/algorithms/misc.py

@@ -1432,9 +1432,7 @@ def merge_rois(in_files, in_idxs, in_ref, dtype=None, out_file=None):
         for cname, iname in zip(in_files, in_idxs):
             f = np.load(iname)
             idxs = np.squeeze(f["arr_0"])
-            cdata = np.asanyarray(nb.load(cname).dataobj).reshape(
-                -1, ndirs
-            )
+            cdata = np.asanyarray(nb.load(cname).dataobj).reshape(-1, ndirs)
             nels = len(idxs)
             idata = (idxs,)
             try:
@@ -1464,9 +1462,7 @@ def merge_rois(in_files, in_idxs, in_ref, dtype=None, out_file=None):
             idxs = np.squeeze(f["arr_0"])
 
             for d, fname in enumerate(nii):
-                data = np.asanyarray(nb.load(fname).dataobj).reshape(
-                    -1
-                )
+                data = np.asanyarray(nb.load(fname).dataobj).reshape(-1)
                 cdata = nb.load(cname).dataobj[..., d].reshape(-1)
                 nels = len(idxs)
                 idata = (idxs,)

nipype/interfaces/dipy/simulate.py

@@ -140,11 +140,7 @@ def _run_interface(self, runtime):
 
         # Volume fractions of isotropic compartments
         nballs = len(self.inputs.in_vfms)
-        vfs = np.squeeze(
-            nb.concat_images(
-                self.inputs.in_vfms
-            ).dataobj
-        )
+        vfs = np.squeeze(nb.concat_images(self.inputs.in_vfms).dataobj)
         if nballs == 1:
             vfs = vfs[..., np.newaxis]
         total_vf = np.sum(vfs, axis=3)
@@ -162,9 +158,7 @@ def _run_interface(self, runtime):
         nvox = len(msk[msk > 0])
 
         # Fiber fractions
-        ffsim = nb.concat_images(
-            self.inputs.in_frac
-        )
+        ffsim = nb.concat_images(self.inputs.in_frac)
         ffs = np.nan_to_num(np.squeeze(ffsim.dataobj))  # fiber fractions
         ffs = np.clip(ffs, 0.0, 1.0)
         if nsticks == 1:

nipype/interfaces/nipy/model.py

@@ -115,7 +115,7 @@ def _run_interface(self, runtime):
         if isinstance(functional_runs, (str, bytes)):
             functional_runs = [functional_runs]
         nii = nb.load(functional_runs[0])
-        data = nii.get_fdata(caching='unchanged')
+        data = nii.get_fdata(caching="unchanged")
 
         if isdefined(self.inputs.mask):
             mask = np.asanyarray(nb.load(self.inputs.mask).dataobj) > 0

nipype/utils/config.py

@@ -91,7 +91,9 @@ def __init__(self, *args, **kwargs):
         self._config = configparser.ConfigParser()
         self._cwd = None
 
-        config_dir = os.path.expanduser(os.getenv("NIPYPE_CONFIG_DIR", default="~/.nipype"))
+        config_dir = os.path.expanduser(
+            os.getenv("NIPYPE_CONFIG_DIR", default="~/.nipype")
+        )
         self.data_file = os.path.join(config_dir, "nipype.json")
 
         self.set_default_config()