remove tag output

Author: oma219

include/pfp_lcp_doc_two_pass.hpp

@@ -127,17 +127,6 @@ class pfp_lcp_doc_two_pass {
             dirty_lcp_cache[i] = max_lcp_init;
         // DEBUG: END ---------------------------------------------
 
-
-        // TAG: START ---------------------------------------------
-        size_t num_tag_runs = 1;
-        size_t curr_tag_doc = 0;
-        size_t num_checks = 0;
-        std::vector<size_t> sa_samples_for_tag;
-        size_t prev_sa_sample = 0;
-        size_t shared_boundary = 1;
-        std::set<size_t> set_of_tag_samples;
-        // TAG: END -----------------------------------------------
-
         // create a struct to store data for temp file
         temp_data_entry_t curr_data_entry;
 
@@ -216,40 +205,6 @@ class pfp_lcp_doc_two_pass {
                     bool is_start = (pos == 0 || curr_bwt_ch != prev_bwt_ch) ? 1 : 0;
                     bool is_end = (pos == ref_build->total_length-1); // only special case, common case is below
 
-                    // DEBUG -----------------------------
-                    if (pos > 0) {
-                        num_checks++;
-                        bool tag_run_boundary = false;
-                        bool bwt_run_boundary = false;
-
-                        // check for start of tag array run
-                        if (doc_i != curr_tag_doc) {
-                            num_tag_runs++;
-                            curr_tag_doc = doc_i;
-                            tag_run_boundary = true;
-                        }
-
-                        // check for start of bwt run
-                        if (is_start) {
-                            bwt_run_boundary = true;
-                        }
-
-                        // check if they both occur with each other
-                        if (bwt_run_boundary && tag_run_boundary) {shared_boundary++;}
-
-                        // check if either occurs and store the two sa values
-                        if (bwt_run_boundary || tag_run_boundary) {
-                            sa_samples_for_tag.push_back(sa_i);
-                            sa_samples_for_tag.push_back(prev_sa_sample);
-                        } 
-                    } else if (pos == 0) {
-                        curr_tag_doc = doc_i;
-                        sa_samples_for_tag.push_back(sa_i);
-                    }
-                    prev_sa_sample = sa_i;
-                    // DEBUG -----------------------------
-
-
                     // handle scenario where the previous suffix was a end of a run
                     if (pos > 0 && prev_bwt_ch != curr_bwt_ch)
                         curr_data_entry.is_end = true;
@@ -313,25 +268,6 @@ class pfp_lcp_doc_two_pass {
         }
         DONE_LOG((std::chrono::system_clock::now() - start));
 
-        // DEBUG -----------------------------
-        std::cout << "\n\nDEBUG --------------------------------- \n\n";
-        sa_samples_for_tag.push_back(prev_sa_sample);
-
-        // print number fo tag runs and number of shared boundaries
-        std::cout << "num_tag_runs (t) = " << num_tag_runs << std::endl;
-        std::cout << "num_checks = " << num_checks << "\n\n";
-
-        std::cout << "shared_boundary = " << shared_boundary << "\n\n";
-
-        // build set and print size
-        for (auto x: sa_samples_for_tag) {set_of_tag_samples.insert(x);}
-
-        std::cout << "size of sa array = " << sa_samples_for_tag.size() << std::endl;
-        std::cout << "size of sa array set = " << set_of_tag_samples.size() << "\n\n";
-
-        std::cout << "\n\nDEBUG --------------------------------- \n\n";
-        // DEBUG -----------------------------
-
         // make sure to write the last suffix to temp data
         write_data_to_temp_file(curr_data_entry);
         if (curr_data_entry.is_start || curr_data_entry.is_end)