ngff/references.bib at main · ome/ngff · GitHub

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@article{moore2021ome,
  title={OME-NGFF: a next-generation file format for expanding bioimaging data-access strategies},
  author={Moore, Josh and Allan, Chris and Besson, S{\'e}bastien and Burel, Jean-Marie and Diel, Erin and Gault, David and Kozlowski, Kevin and Lindner, Dominik and Linkert, Melissa and Manz, Trevor and others},
  journal={Nature methods},
  volume={18},
  number={12},
  pages={1496--1498},
  year={2021},
  publisher={Nature Publishing Group US New York}
}

@software{ngff_spec_latest,
  author       = {Josh Moore},
  title        = {ome/ngff: Next-generation file format (NGFF)
                   specifications for storing bioimaging data in the
                   cloud.
                  },
  month        = nov,
  year         = 2020,
  publisher    = {Zenodo},
  version      = {0.0.1},
  doi          = {10.5281/zenodo.4282107},
  url          = {https://ngff.openmicroscopy.org/latest/},
}

@software{zarr,
  author       = {Alistair Miles and
                  jakirkham and
                  Martin Durant and
                  Matthias Bussonnier and
                  James Bourbeau and
                  Tarik Onalan and
                  Joe Hamman and
                  Zain Patel and
                  Matthew Rocklin and
                  shikharsg and
                  Ryan Abernathey and
                  Josh Moore and
                  Vincent Schut and
                  raphael dussin and
                  Elliott Sales de Andrade and
                  Charles Noyes and
                  Aleksandar Jelenak and
                  Anderson Banihirwe and
                  Chris Barnes and
                  George Sakkis and
                  Jan Funke and
                  Jerome Kelleher and
                  Joe Jevnik and
                  Justin Swaney and
                  Poruri Sai Rahul and
                  Stephan Saalfeld and
                  john and
                  Tommy Tran and
                  pyup.io bot and
                  sbalmer},
  title        = {zarr-developers/zarr-python: v2.5.0},
  month        = oct,
  year         = 2020,
  publisher    = {Zenodo},
  version      = {v2.5.0},
  doi          = {10.5281/zenodo.4069231},
  url          = {https://doi.org/10.5281/zenodo.4069231},
}

@software{n5,
  author       = {Stephan Saalfeld and
                  Igor Pisarev and
                  Philipp Hanslovsky and
                  Andrew Champion and
                  Curtis Rueden and
                  John Bogovic and
                  Mark Kittisopikul and
                  jakirkham},
  title        = {saalfeldlab/n5: n5-2.5.1},
  month        = may,
  year         = 2022,
  publisher    = {Zenodo},
  version      = {n5-2.5.1},
  doi          = {10.5281/zenodo.6578232},
  url          = {https://doi.org/10.5281/zenodo.6578232},
}

@software{ome-zarr-py,
  author       = {Josh Moore and
                  Will Moore and
                  Sébastien Besson and
                  jean-marie burel and
                  Constantin Pape and
                  Dimitri Papadopoulos Orfanos and
                  David Stansby and
                  toloudis and
                  Giovanni Palla and
                  Guillaume Gay and
                  Evan Lyall and
                  Satrajit Ghosh and
                  Simon Li and
                  Benjamin Rombaut and
                  Minh Nhat Nguyen and
                  Juan Nunez-Iglesias and
                  aeisenbarth and
                  Albert Dominguez Mantes and
                  Yaroslav Halchenko and
                  Joshua Gould and
                  Camilo Laiton and
                  Tommaso Comparin and
                  LucaMarconato and
                  Heath Patterson and
                  Wouter-Michiel Vierdag and
                  Talley Lambert and
                  Sean Martin and
                  Peter Sobolewski and
                  M Bussonnier},
  title        = {ome/ome-zarr-py: v0.12.2},
  month        = aug,
  year         = 2025,
  publisher    = {Zenodo},
  version      = {v0.12.2},
  doi          = {10.5281/zenodo.16925672},
  url          = {https://doi.org/10.5281/zenodo.16925672},
}