Update zarrita.js #92
Description
In looking to use ome-zarr.js for rendering thumbnails, I npm install ome-zarr.js but before updating the code to use that library, I found that thumbnails had broken with the existing code, which seems to be due to the update of zarrita.js.
Starting from scratch (master branch, thumbnails OK with $ npm run dev), uses zarrita@0.4.0-next.15.
Then...
npm install zarrita@0.4.0-next.16
npm run dev
Thumbnails still working OK...
npm install zarrita@0.4.0-next.17
npm run dev
Thumbnails not working.
See console errors:
Uncaught (in promise) TypeError: Cannot read properties of undefined (reading 'TypedArray')
coming from:
async function get(arr, selection, opts, setter2) {
var _a2;
let context = get_context(arr);
let indexer = new BasicIndexer({
selection,
shape: arr.shape,
chunk_shape: arr.chunks
});
> let out = setter2.prepare(new context.TypedArray(indexer.shape.reduce((a, b) => a * b, 1)), indexer.shape, context.get_strides(indexer.shape));
git diff
diff --git a/ome2024-ngff-challenge/package-lock.json b/ome2024-ngff-challenge/package-lock.json
index f1861f1..0f2ff8e 100644
--- a/ome2024-ngff-challenge/package-lock.json
+++ b/ome2024-ngff-challenge/package-lock.json
@@ -10,7 +10,7 @@
"dependencies": {
"papaparse": "^5.4.1",
"svelte-tiny-virtual-list": "^2.1.2",
- "zarrita": "^0.4.0-next.15"
+ "zarrita": "^0.4.0-next.17"
},
"devDependencies": {
"@sveltejs/vite-plugin-svelte": "^3.1.1",
@@ -701,39 +701,53 @@
"dev": true
},
"node_modules/@zarrita/core": {
- "version": "0.1.0-next.14",
- "resolved": "https://registry.npmjs.org/@zarrita/core/-/core-0.1.0-next.14.tgz",
- "integrity": "sha512-tsCZhqGU4S1YlNfPMAvw3nJodPxLgXqRSrpYF5Mf4gsi2fxDymNmJA2oSxuA4lLqTDCcvPBCubYykyF9ADxArw==",
+ "version": "0.1.0-next.24",
+ "resolved": "https://registry.npmjs.org/@zarrita/core/-/core-0.1.0-next.24.tgz",
+ "integrity": "sha512-KBenVZ1c2koRiqNbnrmz4H6d+QN/24ON5XAD0L6yWWXG7MC6onFr2DBjyqnZyytXXlVQf7pHxnrLdhW+Mecu4g==",
+ "license": "MIT",
"dependencies": {
- "@zarrita/storage": "^0.1.0-next.6",
- "@zarrita/typedarray": "^0.1.0-next.3",
- "numcodecs": "^0.3.1"
+ "zarrita": "^0.4.0-next.27"
+ }
+ },
+ "node_modules/@zarrita/core/node_modules/zarrita": {
+ "version": "0.4.0",
+ "resolved": "https://registry.npmjs.org/zarrita/-/zarrita-0.4.0.tgz",
+ "integrity": "sha512-MK2uustzUF0PooWl6HVUfTares/nmaq5NwRZux/L3npvkSX6Qdpd7w/NOW2cF9EI35yqggoHNi3Nlxyq1YT5eQ==",
+ "license": "MIT",
+ "dependencies": {
+ "@zarrita/storage": "^0.1.0",
+ "numcodecs": "^0.3.2"
}
},
"node_modules/@zarrita/indexing": {
- "version": "0.1.0-next.16",
- "resolved": "https://registry.npmjs.org/@zarrita/indexing/-/indexing-0.1.0-next.16.tgz",
- "integrity": "sha512-cNHwpcudHz3R3mOkLe14UgTBf4Jq+gFNG4Dv+AtX93WSTLCg42YSSX6gnLBnrRIoB7KB0FUwpglDDi2R4jIZKw==",
+ "version": "0.1.0-next.26",
+ "resolved": "https://registry.npmjs.org/@zarrita/indexing/-/indexing-0.1.0-next.26.tgz",
+ "integrity": "sha512-gRxkIWb/wly9iu4yMXxAiWBqChOS3VVR4cGr263MgiicQqZBVU6+PdnvU9FERZJAmaMwaJqlSenUIcOnhcMKlQ==",
+ "license": "MIT",
"dependencies": {
- "@zarrita/core": "^0.1.0-next.14",
- "@zarrita/storage": "^0.1.0-next.6",
- "@zarrita/typedarray": "^0.1.0-next.3"
+ "zarrita": "^0.4.0-next.26"
+ }
+ },
+ "node_modules/@zarrita/indexing/node_modules/zarrita": {
+ "version": "0.4.0",
+ "resolved": "https://registry.npmjs.org/zarrita/-/zarrita-0.4.0.tgz",
+ "integrity": "sha512-MK2uustzUF0PooWl6HVUfTares/nmaq5NwRZux/L3npvkSX6Qdpd7w/NOW2cF9EI35yqggoHNi3Nlxyq1YT5eQ==",
+ "license": "MIT",
+ "dependencies": {
+ "@zarrita/storage": "^0.1.0",
+ "numcodecs": "^0.3.2"
}
},
"node_modules/@zarrita/storage": {
- "version": "0.1.0-next.6",
- "resolved": "https://registry.npmjs.org/@zarrita/storage/-/storage-0.1.0-next.6.tgz",
- "integrity": "sha512-7e1rxCCGA6aaulYiMAZOdMJ+GxVrD01QRvIjCCc1RMKo0otYUAarX2wnoatpSy+m3e+TFjB70M+GQce0XMhNwA==",
+ "version": "0.1.0",
+ "resolved": "https://registry.npmjs.org/@zarrita/storage/-/storage-0.1.0.tgz",
+ "integrity": "sha512-lSGDQik2fLt/UyvWzWd23sJFHckEmk50F9Baz2XlbgFQhvd2EVBcHGweOTBhu3c5SB05TzOnlY1M1i2FMDi6YA==",
+ "license": "MIT",
"dependencies": {
"reference-spec-reader": "^0.2.0",
"unzipit": "^1.4.3"
}
},
- "node_modules/@zarrita/typedarray": {
- "version": "0.1.0-next.3",
- "resolved": "https://registry.npmjs.org/@zarrita/typedarray/-/typedarray-0.1.0-next.3.tgz",
- "integrity": "sha512-DpSaU3Cr6HmYDC/v8oM+e219cHU/kzKma309Z9E+QbpRnZycKNbSTKcxFR7FqB6HgB9640gzNUVFG5P+wzX5Xg=="
- },
"node_modules/acorn": {
"version": "8.12.1",
"resolved": "https://registry.npmjs.org/acorn/-/acorn-8.12.1.tgz",
@@ -875,7 +889,8 @@
"node_modules/fflate": {
"version": "0.8.2",
"resolved": "https://registry.npmjs.org/fflate/-/fflate-0.8.2.tgz",
- "integrity": "sha512-cPJU47OaAoCbg0pBvzsgpTPhmhqI5eJjh/JIu8tPj5q+T7iLvW/JAYUqmE7KOB4R1ZyEhzBaIQpQpardBF5z8A=="
+ "integrity": "sha512-cPJU47OaAoCbg0pBvzsgpTPhmhqI5eJjh/JIu8tPj5q+T7iLvW/JAYUqmE7KOB4R1ZyEhzBaIQpQpardBF5z8A==",
+ "license": "MIT"
},
"node_modules/fsevents": {
"version": "2.3.3",
@@ -958,6 +973,7 @@
"version": "0.3.2",
"resolved": "https://registry.npmjs.org/numcodecs/-/numcodecs-0.3.2.tgz",
"integrity": "sha512-6YSPnmZgg0P87jnNhi3s+FVLOcIn3y+1CTIgUulA3IdASzK9fJM87sUFkpyA+be9GibGRaST2wCgkD+6U+fWKw==",
+ "license": "MIT",
"dependencies": {
"fflate": "^0.8.0"
}
@@ -1015,7 +1031,8 @@
"node_modules/reference-spec-reader": {
"version": "0.2.0",
"resolved": "https://registry.npmjs.org/reference-spec-reader/-/reference-spec-reader-0.2.0.tgz",
- "integrity": "sha512-q0mfCi5yZSSHXpCyxjgQeaORq3tvDsxDyzaadA/5+AbAUwRyRuuTh0aRQuE/vAOt/qzzxidJ5iDeu1cLHaNBlQ=="
+ "integrity": "sha512-q0mfCi5yZSSHXpCyxjgQeaORq3tvDsxDyzaadA/5+AbAUwRyRuuTh0aRQuE/vAOt/qzzxidJ5iDeu1cLHaNBlQ==",
+ "license": "MIT"
},
"node_modules/rollup": {
"version": "4.21.2",
@@ -1107,6 +1124,7 @@
"version": "1.4.3",
"resolved": "https://registry.npmjs.org/unzipit/-/unzipit-1.4.3.tgz",
"integrity": "sha512-gsq2PdJIWWGhx5kcdWStvNWit9FVdTewm4SEG7gFskWs+XCVaULt9+BwuoBtJiRE8eo3L1IPAOrbByNLtLtIlg==",
+ "license": "MIT",
"dependencies": {
"uzip-module": "^1.0.2"
},
@@ -1117,7 +1135,8 @@
"node_modules/uzip-module": {
"version": "1.0.3",
"resolved": "https://registry.npmjs.org/uzip-module/-/uzip-module-1.0.3.tgz",
- "integrity": "sha512-AMqwWZaknLM77G+VPYNZLEruMGWGzyigPK3/Whg99B3S6vGHuqsyl5ZrOv1UUF3paGK1U6PM0cnayioaryg/fA=="
+ "integrity": "sha512-AMqwWZaknLM77G+VPYNZLEruMGWGzyigPK3/Whg99B3S6vGHuqsyl5ZrOv1UUF3paGK1U6PM0cnayioaryg/fA==",
+ "license": "MIT"
},
"node_modules/vite": {
"version": "5.4.3",
@@ -1193,13 +1212,14 @@
}
},
"node_modules/zarrita": {
- "version": "0.4.0-next.16",
- "resolved": "https://registry.npmjs.org/zarrita/-/zarrita-0.4.0-next.16.tgz",
- "integrity": "sha512-nCkhzMopRwDFUFDmK5RGvgvVTTf9vlElBZsrsZF97sEM3oAfv95D9VYDY7Xp489IjE6XGB8nYwsSzRO0EsUiUw==",
+ "version": "0.4.0-next.17",
+ "resolved": "https://registry.npmjs.org/zarrita/-/zarrita-0.4.0-next.17.tgz",
+ "integrity": "sha512-5vN+B+IY4GSh2JN9tqFNPJtAP20Q+eVPokDuG/TwDKn33bS3g8wyW5hENFfWLzxAEmSWvndWy+EU1xJ1Dlt5AA==",
+ "license": "MIT",
"dependencies": {
- "@zarrita/core": "^0.1.0-next.14",
- "@zarrita/indexing": "^0.1.0-next.16",
- "@zarrita/storage": "^0.1.0-next.6"
+ "@zarrita/core": "^0.1.0-next.15",
+ "@zarrita/indexing": "^0.1.0-next.17",
+ "@zarrita/storage": "^0.1.0-next.7"
}
}
}
diff --git a/ome2024-ngff-challenge/package.json b/ome2024-ngff-challenge/package.json
index b3af97b..2ecffb1 100644
--- a/ome2024-ngff-challenge/package.json
+++ b/ome2024-ngff-challenge/package.json
@@ -16,6 +16,6 @@
"dependencies": {
"papaparse": "^5.4.1",
"svelte-tiny-virtual-list": "^2.1.2",
- "zarrita": "^0.4.0-next.15"
+ "zarrita": "^0.4.0-next.17"
}
}