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1 parent 3c723e2 commit 332944dCopy full SHA for 332944d
Dockerfile
@@ -34,13 +34,13 @@ ENV PATH=$PATH:/opt/miniconda3/bin/
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# install environment's dependencies
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COPY environment.yml /opt/
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-RUN conda env create -f /opt/environment.yml
+RUN conda env create --solver libmamba -f /opt/environment.yml
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# install artic into conda environment "artic"
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RUN git clone https://github.com/artic-network/fieldbioinformatics.git \
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&& cd fieldbioinformatics \
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&& git checkout 1.2.1 \
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- && conda env create -f environment.yml \
+ && conda env create --solver libmamba -f environment.yml \
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&& conda run -n artic python setup.py install \
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&& conda clean -a
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