diff --git a/.github/workflows/ci-cd.yml b/.github/workflows/ci-cd.yml index d120bf6..fd4e595 100644 --- a/.github/workflows/ci-cd.yml +++ b/.github/workflows/ci-cd.yml @@ -33,15 +33,15 @@ jobs: sh -c "$(curl --location https://taskfile.dev/install.sh)" -- -d # Cache dependencies from poetry to speed things up - - name: Load cached venv - id: cached-poetry-dependencies - uses: actions/cache@v3 - with: - path: .venv - key: venv-${{ runner.os }}-${{ hashFiles('**/poetry.lock') }} - - - name: Install and upgrade pip and poetry - run: python -m pip install --upgrade pip poetry + # - name: Load cached venv + # id: cached-poetry-dependencies + # uses: actions/cache@v3 + # with: + # path: .venv + # key: venv-${{ runner.os }}-${{ hashFiles('**/poetry.lock') }} + + - name: Install and upgrade pip and uv + run: python -m pip install --upgrade pip uv - name: Install Dependencies run: ./bin/task setup diff --git a/Taskfile.yml b/Taskfile.yml index 25e713f..6bdb4e3 100644 --- a/Taskfile.yml +++ b/Taskfile.yml @@ -4,24 +4,24 @@ tasks: setup: desc: Setup the development environment. cmds: - - poetry install + - uv sync lint: desc: Lints the code and reports on issues. cmds: - - poetry run black --check . - - poetry run ruff check . + - uv run black --check . + - uv run ruff check . build: desc: Builds the python package cmds: - - poetry build + - uv build test: desc: Runs tests on the code cmds: - > - poetry run pytest test + uv run pytest test --cov=lasso --cov-report=html @@ -31,7 +31,7 @@ tasks: - test - docs:changelog cmds: - - poetry run mkdocs serve + - uv run mkdocs serve docs:build: desc: Build the documentation @@ -39,7 +39,7 @@ tasks: - test - docs:changelog cmds: - - poetry run mkdocs build + - uv run mkdocs build docs:deploy: desc: Deploys the docs to GitHub (be careful!) @@ -47,13 +47,13 @@ tasks: - test - docs:changelog cmds: - - poetry run mkdocs gh-deploy + - uv run mkdocs gh-deploy docs:changelog: desc: Generates the changelog cmds: - > - poetry run git-changelog . + uv run git-changelog . --output CHANGELOG.md --style angular --template angular diff --git a/docs/diffcrash/run.md b/docs/diffcrash/run.md index 98a0dcf..da767d2 100644 --- a/docs/diffcrash/run.md +++ b/docs/diffcrash/run.md @@ -18,7 +18,7 @@ easier. You can get the run info by performing: ```console -$ python -m lasso.diffcrash.run --help +$ diffcrash --help ==== D I F F C R A S H ==== diff --git a/docs/dimred/command_line_interface.md b/docs/dimred/command_line_interface.md index 7a7b4c9..afebea8 100644 --- a/docs/dimred/command_line_interface.md +++ b/docs/dimred/command_line_interface.md @@ -160,7 +160,7 @@ resizeContents() You can call the command-line tool as follows: ```console -$ python -m lasso.dimred.run --help +$ dimred --help usage: run.py [-h] --reference-run REFERENCE_RUN [--exclude-runs [EXCLUDE_RUNS [EXCLUDE_RUNS ...]]] diff --git a/lasso/__init__.py b/lasso/__init__.py index e69de29..3ef6419 100644 --- a/lasso/__init__.py +++ b/lasso/__init__.py @@ -0,0 +1,7 @@ +from importlib.metadata import version, PackageNotFoundError + +try: + __version__ = version("lasso-python") +except PackageNotFoundError: + # package is not installed + pass diff --git a/lasso/dimred/graph_laplacian.py b/lasso/dimred/graph_laplacian.py index 286aefc..5b81d19 100644 --- a/lasso/dimred/graph_laplacian.py +++ b/lasso/dimred/graph_laplacian.py @@ -96,7 +96,7 @@ def _laplacian_gauss_idw( for i, (j, d, e, k) in enumerate( zip( *tree.query_radius(points, return_distance=True, r=search_radius), - 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