diff --git a/instances/latest/commonCoordinateSpaceVersions/MNI-Colin27/MNI-Colin27_1998.jsonld b/instances/latest/commonCoordinateSpaceVersions/MNI-Colin27/MNI-Colin27_1998.jsonld index 68b5989b1..209665d45 100644 --- a/instances/latest/commonCoordinateSpaceVersions/MNI-Colin27/MNI-Colin27_1998.jsonld +++ b/instances/latest/commonCoordinateSpaceVersions/MNI-Colin27/MNI-Colin27_1998.jsonld @@ -1,16 +1,18 @@ { - "@context": { - "@vocab": "https://openminds.om-i.org/props/" - }, - "@id": "https://openminds.om-i.org/instances/commonCoordinateSpaceVersion/MNI-Colin27_1998", - "@type": "https://openminds.om-i.org/types/CommonCoordinateSpaceVersion", - "abbreviation": "MNI-Colin27", - "accessibility": null, - "anatomicalAxesOrientation": { - "@id": "https://openminds.om-i.org/instances/anatomicalAxesOrientation/RAS" - }, + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/commonCoordinateSpaceVersion/MNI-Colin27_1998", + "@type": "https://openminds.om-i.org/types/CommonCoordinateSpaceVersion", + "abbreviation": "MNI-Colin27", + "accessibility": { + "@id": "https://openminds.om-i.org/instances/productAccessibility/freeAccess" + }, + "anatomicalAxesOrientation": { + "@id": "https://openminds.om-i.org/instances/anatomicalAxesOrientation/RAS" + }, "author": null, - "axesOrigin": [ + "axesOrigin": [ { "@type": "https://openminds.om-i.org/types/QuantitativeValue", "value": 75.0 @@ -22,37 +24,43 @@ { "@type": "https://openminds.om-i.org/types/QuantitativeValue", "value": 67.0 + } + ], + "copyright": null, + "custodian": null, + "defaultImage": null, + "description": "A stereotaxic average of T1-, T2- and PD-weighted MRI scans of the same individual (27, 12 and 12 scans, respectively). It was created at the Montreal Neurological Institute (MNI). The MRI scans were automatically registered to a common stereotaxic space using MRITOTAL (an automated volumetric registration procedure), resampled and intensity averaged. [sources: [Holmes et al. (1998)](https://doi.org/10.1097/00004728-199803000-00032) and descriptions provided under [‘MNI-Colin27’ on their homepage]( https://www.mcgill.ca/bic/software/tools-data-analysis/anatomical-mri/atlases)]", + "digitalIdentifier": null, + "fullDocumentation": { + "@id": "https://www.mcgill.ca/bic/software/tools-data-analysis/anatomical-mri/atlases/colin-27" + }, + "fullName": "MNI Colin27 Average Brain Stereotaxic Registration Model", + "funding": null, + "homepage": "https://www.mcgill.ca/bic/software/tools-data-analysis/anatomical-mri/atlases", + "howToCite": "Please make sure to follow the copyright of the [MNI Colin27 Average Brain Stereotaxic Registration Model (original 1998 version)](https://www.mcgill.ca/bic/software/tools-data-analysis/anatomical-mri/atlases/colin-27). You may also cite its original publication, [Holmes et al. (1998)](http://doi.org/10.1097/00004728-199803000-00032).", + "isAlternativeVersionOf": [ + { + "@id": "https://openminds.om-i.org/instances/commonCoordinateSpaceVersion/MNI-Colin27_2008" + } + ], + "isNewVersionOf": null, + "keyword": null, + "license": null, + "nativeUnit": { + "@id": "https://openminds.om-i.org/instances/unitOfMeasurement/millimeter" + }, + "ontologyIdentifier": null, + "otherContribution": null, + "relatedPublication": [ + { + "@id": "https://doi.org/10.1097/00004728-199803000-00032" } ], - "copyright": null, - "custodian": null, - "defaultImage": null, - "description": null, - "digitalIdentifier": null, - "fullDocumentation": null, - "fullName": "MNI Colin27 Average Brain Stereotaxic Registration Model", - "funding": null, - "homepage": "https://www.mcgill.ca/bic/software/tools-data-analysis/anatomical-mri/atlases", - "howToCite": null, - "isAlternativeVersionOf": [ - { - "@id": "https://openminds.om-i.org/instances/commonCoordinateSpaceVersion/MNI-Colin27_2008" - } - ], - "isNewVersionOf": null, - "keyword": null, - "license": null, - "nativeUnit": { - "@id": "https://openminds.om-i.org/instances/unitOfMeasurement/millimeter" - }, - "ontologyIdentifier": null, - "otherContribution": null, - "relatedPublication": null, - "releaseDate": "1998-06-01", - "repository": null, - "supportChannel": null, - "shortName": "MNI Colin27 Average Brain", - "usedSpecimen": null, - "versionIdentifier": "1998", - "versionInnovation": null + "releaseDate": "1998-06-01", + "repository": null, + "shortName": "MNI Colin27 Average Brain", + "supportChannel": null, + "usedSpecimen": null, + "versionIdentifier": "1998", + "versionInnovation": "This is the original version of the common coordinate space. The T1 average image was created in a two step process. First, each of the 27 T1-weighted scans were registered to stereotaxic space using the MRITOTAL procedure and resampled onto a 1 mm grid in stereotaxic space. All 27 scans were averaged together to create an initial average. This average volume was used as a target for the second phase of registration where each original T1-weighted MRI was re-registered in stereotaxic space. This procedure has the advantage of removing the small variance in intra-subject mapping in stereotaxic space associated with the use of a multi-subject average. The T2 and proton density (PD) average images were performed similarly and were also of higher quality than single scans, but the improvement was not as dramatic as that of the T1 volumes. [sources: [’Methods’ summary on their homepage]( https://www.mcgill.ca/bic/software/tools-data-analysis/anatomical-mri/atlases/colin-27) and [Holmes et al. (1998)](https://doi.org/10.1097/00004728-199803000-00032)]" } diff --git a/instances/latest/commonCoordinateSpaceVersions/MNI-Colin27/MNI-Colin27_2008.jsonld b/instances/latest/commonCoordinateSpaceVersions/MNI-Colin27/MNI-Colin27_2008.jsonld index d40a5d8e0..6e61a0dd8 100644 --- a/instances/latest/commonCoordinateSpaceVersions/MNI-Colin27/MNI-Colin27_2008.jsonld +++ b/instances/latest/commonCoordinateSpaceVersions/MNI-Colin27/MNI-Colin27_2008.jsonld @@ -1,43 +1,56 @@ { - "@context": { - "@vocab": "https://openminds.om-i.org/props/" - }, - "@id": "https://openminds.om-i.org/instances/commonCoordinateSpaceVersion/MNI-Colin27_2008", - "@type": "https://openminds.om-i.org/types/CommonCoordinateSpaceVersion", - "abbreviation": "MNI-Colin27", - "accessibility": null, - "anatomicalAxesOrientation": null, + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/commonCoordinateSpaceVersion/MNI-Colin27_2008", + "@type": "https://openminds.om-i.org/types/CommonCoordinateSpaceVersion", + "abbreviation": "MNI-Colin27", + "accessibility": { + "@id": "https://openminds.om-i.org/instances/productAccessibility/freeAccess" + }, + "anatomicalAxesOrientation": { + "@id": "https://openminds.om-i.org/instances/anatomicalAxesOrientation/RAS" + }, "author": null, - "axesOrigin": null, - "copyright": null, - "custodian": null, - "defaultImage": null, - "description": null, - "digitalIdentifier": null, - "fullDocumentation": null, - "fullName": "MNI Colin27 Average Brain Stereotaxic Registration Model", - "funding": null, - "homepage": "https://www.mcgill.ca/bic/software/tools-data-analysis/anatomical-mri/atlases", - "howToCite": null, - "isAlternativeVersionOf": [ - { - "@id": "https://openminds.om-i.org/instances/commonCoordinateSpaceVersion/MNIColin27_1998" - } - ], - "isNewVersionOf": null, - "keyword": null, - "license": null, - "nativeUnit": { - "@id": "https://openminds.om-i.org/instances/unitOfMeasurement/millimeter" - }, - "ontologyIdentifier": null, - "otherContribution": null, - "relatedPublication": null, - "releaseDate": "2006-08-01", - "repository": null, - "supportChannel": null, - "shortName": "MNI Colin27 Average Brain", - "usedSpecimen": null, - "versionIdentifier": "2008", - "versionInnovation": null + "axesOrigin": null, + "copyright": null, + "custodian": null, + "defaultImage": null, + "description": "A stereotaxic average of T1-, T2- and PD-weighted MRI scans of the same individual (27, 12 and 12 scans, respectively). It was created at the Montreal Neurological Institute (MNI). The MRI scans were automatically registered to a common stereotaxic space using MRITOTAL (an automated volumetric registration procedure), resampled and intensity averaged. [sources: [Holmes et al. (1998)](https://doi.org/10.1097/00004728-199803000-00032) and descriptions provided under [‘MNI-Colin27’ on their homepage]( https://www.mcgill.ca/bic/software/tools-data-analysis/anatomical-mri/atlases)]", + "digitalIdentifier": null, + "fullDocumentation": { + "@id": "https://www.mcgill.ca/bic/software/tools-data-analysis/anatomical-mri/atlases/colin-27-2008" + }, + "fullName": "MNI Colin27 Average Brain Stereotaxic Registration Model", + "funding": null, + "homepage": "https://www.mcgill.ca/bic/software/tools-data-analysis/anatomical-mri/atlases", + "howToCite": "Please make sure to follow the copyright of the [MNI Colin27 Average Brain Stereotaxic Registration Model (high-resolution version 2008)](https://www.mcgill.ca/bic/software/tools-data-analysis/anatomical-mri/atlases/colin-27-2008). You may also cite its original publication, [Holmes et al. (1998)](http://doi.org/10.1097/00004728-199803000-00032), and the corresponding publication, [Aubert-Broche et al. (2006)](https://doi.org/10.1016/j.neuroimage.2006.03.052).", + "isAlternativeVersionOf": [ + { + "@id": "https://openminds.om-i.org/instances/commonCoordinateSpaceVersion/MNI-Colin27_1998" + } + ], + "isNewVersionOf": null, + "keyword": null, + "license": null, + "nativeUnit": { + "@id": "https://openminds.om-i.org/instances/unitOfMeasurement/millimeter" + }, + "ontologyIdentifier": null, + "otherContribution": null, + "relatedPublication": [ + { + "@id": "https://doi.org/10.1097/00004728-199803000-00032" + }, + { + "@id": "https://doi.org/10.1016/j.neuroimage.2006.03.052" + } + ], + "releaseDate": "2006-08-01", + "repository": null, + "shortName": "MNI Colin27 Average Brain", + "supportChannel": null, + "usedSpecimen": null, + "versionIdentifier": "2008", + "versionInnovation": "This is the high-resolution version of the common coordinate space. These volumes are defined at a 0.5 mm isotropic voxel grid in Talairach space, with dimensions 362x434x362 (XxYxZ) and start coordinates −90,−126,−72 (x,y,z). [sources: [’Overview’ summary on their homepage]( https://www.mcgill.ca/bic/software/tools-data-analysis/anatomical-mri/atlases/colin-27-2008) and [Aubert-Broche et al. (2006)](https://doi.org/10.1016/j.neuroimage.2006.03.052)]" } diff --git a/instances/latest/commonCoordinateSpaces/MNI-Colin27.jsonld b/instances/latest/commonCoordinateSpaces/MNI-Colin27.jsonld index 4cf3e84e4..58eeebb16 100644 --- a/instances/latest/commonCoordinateSpaces/MNI-Colin27.jsonld +++ b/instances/latest/commonCoordinateSpaces/MNI-Colin27.jsonld @@ -1,28 +1,28 @@ { - "@context": { - "@vocab": "https://openminds.om-i.org/props/" - }, - "@id": "https://openminds.om-i.org/instances/commonCoordinateSpace/MNI-Colin27", - "@type": "https://openminds.om-i.org/types/CommonCoordinateSpace", - "abbreviation": "MNI-Colin27", - "author": null, - "custodian": null, - "description": "The 'MNI Colin 27 Average Brain Stereotaxic Registration Model' is a stereotaxic average of 27 T1-weighted MRI scans of the same individual. It was created at the Montreal Neurological Institute (MNI) in a two step process: (1) each of the 27 T1-weighted scans were registered to stereotaxic space using MRITOTAL (an automated volumetric registration procedure) and resampled onto a 1mm grid. All 27 scans were averaged together to create an initial average. (2) The initial average volume was used as a target for a second phase of registration where each original T1-weighted MRI was re-registered in stereotaxic space. This two-step procedure has the advantage of removing the small variance in intra-subject mapping in stereotaxic space associated with the use of a multi-subject average resulting in an average brain stereotaxic registration model with high signal-to-noise ratio and structure definition.", - "digitalIdentifier": null, - "fullName": "MNI Colin27 Average Brain Stereotaxic Registration Model", - "hasVersion": [ - { - "@id": "https://openminds.om-i.org/instances/commonCoordinateSpaceVersion/MNI-Colin27_1998" - }, - { - "@id": "https://openminds.om-i.org/instances/commonCoordinateSpaceVersion/MNI-Colin27_2008" - } - ], - "homepage": "https://www.mcgill.ca/bic/software/tools-data-analysis/anatomical-mri/atlases", - "howToCite": "Holmes CJ, Hoge R, Collins L, Woods R, Toga AW, and Evans AC; 'Enhancement of MR images using registration for signal averaging.'; J Comput Assist Tomogr; 1998 Mar-Apr; 22(2):324–33. [doi: 10.1097/00004728-199803000-00032](http://dx.doi.org/10.1097/00004728-199803000-00032)\nAubert-Broche B, Evans AC, and Collins DL; 'A new improved version of the realistic digital brain phantom'; NeuroImage; 2006 Aug;32(1):138–45. [doi: 10.1016/j.neuroimage.2006.03.052](https://doi.org/10.1016/j.neuroimage.2006.03.052)", + "@context": { + "@vocab": "https://openminds.om-i.org/props/" + }, + "@id": "https://openminds.om-i.org/instances/commonCoordinateSpace/MNI-Colin27", + "@type": "https://openminds.om-i.org/types/CommonCoordinateSpace", + "abbreviation": "MNI-Colin27", + "author": null, + "custodian": null, + "description": "A stereotaxic average of T1-, T2- and PD-weighted MRI scans of the same individual (27, 12 and 12 scans, respectively). It was created at the Montreal Neurological Institute (MNI). The MRI scans were automatically registered to a common stereotaxic space using MRITOTAL (an automated volumetric registration procedure), resampled and intensity averaged. [sources: [Holmes et al. (1998)](https://doi.org/10.1097/00004728-199803000-00032) and descriptions provided under [‘MNI-Colin27’ on their homepage]( https://www.mcgill.ca/bic/software/tools-data-analysis/anatomical-mri/atlases)]", + "digitalIdentifier": null, + "fullName": "MNI Colin27 Average Brain Stereotaxic Registration Model", + "hasVersion": [ + { + "@id": "https://openminds.om-i.org/instances/commonCoordinateSpaceVersion/MNI-Colin27_1998" + }, + { + "@id": "https://openminds.om-i.org/instances/commonCoordinateSpaceVersion/MNI-Colin27_2008" + } + ], + "homepage": "https://www.mcgill.ca/bic/software/tools-data-analysis/anatomical-mri/atlases", + "howToCite": "Please make sure to follow the copyright of the [MNI Colin27 Average Brain Stereotaxic Registration Model](https://www.mcgill.ca/bic/software/tools-data-analysis/anatomical-mri/atlases/colin-27). You may also cite its original publication, [Holmes et al. (1998)](http://doi.org/10.1097/00004728-199803000-00032), and/or its later publication, [Aubert-Broche et al. (2006)](https://doi.org/10.1016/j.neuroimage.2006.03.052).", "ontologyIdentifier": null, - "shortName": "MNI Colin27 Average Brain", - "usedSpecies": { - "@id": "https://openminds.om-i.org/instances/species/homoSapiens" - } + "shortName": "MNI Colin27 Average Brain", + "usedSpecies": { + "@id": "https://openminds.om-i.org/instances/species/homoSapiens" + } }