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lines changed Original file line number Diff line number Diff line change @@ -108,13 +108,12 @@ export default class ClinicalPharmacogenomics extends LitElement {
108108 annotate : true ,
109109 outdir : `pharmacogenomics/batch-${ this . _stepsParams . review . batchId } ` ,
110110 } ;
111- this . opencgaSession . opencgaClient . clinicalAnalysis ( )
111+ this . opencgaSession . opencgaClient . clinical ( )
112112 . runPharmacogenomicsAlleleTyper ( pharmacogenomicsAlleleTyperData , {
113113 study : this . opencgaSession . study . fqn ,
114114 jobId : this . _stepsParams . review . jobId ,
115115 jobDescription : this . _stepsParams . review . jobDescription ,
116116 jobTags : this . _stepsParams . review . jobTags ,
117- jobDependsOn : this . _stepsParams . review . jobDependsOn ,
118117 } )
119118 . then ( ( ) => {
120119 // 2. update the individuals to include the folder where the pharmacogenomics results are stored
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