v3.0.0

What's Changed

• TASK-5425 - PortPatch 1.10.1 -> 2.0.0 by @juanfeSanahuja in #843
• TASK-5444 - Fix OpenCB repository versions to conform to XetaBase 2.0.0 version by @juanfeSanahuja in #850
• TASK-4158 - Add functionality for indexing, querying and aggregating to the CVDB Engine by @jmjuanes in #848
• TASK-4389 - Organizations by @jmjuanes in #849
• TASK-5618 - Port Patch 1.10.2 -> 2.0.0 by @juanfeSanahuja in #871

Full Changelog: v2.12.2...v3.0.0

v2.12.2

What's Changed

• TASK-5400 - Rearrangement genomic browsers do not appear in sample variant rearrangement browsers by @jmjuanes in #842
• TASK-5067 - Cytoband notation is missplaced in genome browser by @jmjuanes in #844
• TASK-5095 - IVA Routing issue by @jmjuanes in #837
• TASK-5399 - Custom analysis section in case interpreter appears empty by @jmjuanes in #841
• TASK-5430 - CellBase text in footer and loading spinner missaligned when cellbase host is not found by @gpveronica in #845
• TASK-5094 - Unable to select specific samples for the proband when creating cases by @jmjuanes in #847
• TASK-5487 - Allow IVA configuration for setting cookies in secure/insecure mode by @jmjuanes in #846
• TASK-5580 - Opecga javascript clients added to jsorolla by @gpveronica in #856

Full Changelog: v2.12.1...v2.12.2

v2.12.1

What's Changed

• TASK-4868 - RD tiering analysis displays an empty Clinical Analysis ID by @jmjuanes in #823
• TASK-2355 - variant export to TSV missing some fields values and a typo in "spliceai" attribute by @Rodielm in #788
• TASK-5279 - Port Patch 1.6.6 -> 1.10.1 by @juanfeSanahuja in #830
• TASK-5244 by @imedina in #831
• TASK-5296 - RD tiering form is displayed blank after portpatch 1.6.6 ->1.10.1 by @jmjuanes in #833
• TASK-5114 - Include overlapping exon/intron/UTR for rearrangement breakpoints in sample variant browsers by @jmjuanes in #832
• TASK-4989 - Export button missing in the variant browser, case portal and case interpreter grid by @gpveronica in #835
• TASK-5199 - IVA Extension changes - Support multiple extension providers in IVA by @jmjuanes in #834
• TASK-5374 - IVA create case does not work as TASK-5198 changed data-model by @gpveronica in #836
• TASK-5396 - Fix group by array of analysts in Clinical Analysis Browser by @jmjuanes in #838
• TASK-5395 - Clinical Analysis Browser - Modal Update is not refreshing data after update by @gpveronica in #839
• TASK-5408 - Case Interpreter Landing Manager - Case not available by @gpveronica in #840

Full Changelog: v2.12.0...v2.12.1

v2.12.0

What's Changed

• TASK-4900-1.6.5 - JSorolla Build Error (deprecated library) by @gpveronica in #811
• TASK-5058 - IVA tests are failing in Sample, Panels, Individual, and Family Browsers by @jmjuanes in #819
• TASK-4821 - The observations (report) step is empty in Case Interpreter by @jmjuanes in #803
• TASK-4497 by @gpveronica in #809
• TASK-4753 - Implement RD Tiering Disable/Enable option by configuration. Not currently working. by @jmjuanes in #820
• TASK-4937 - Variant Browser - Ignored client settings in columns with sub-columns by @gpveronica in #817
• TASK-4962 - Implement a testing system in jsorolla-enterprise by @jmjuanes in #818
• TASK-5096 - IVA issue when logout from CAS by @jmjuanes in #822
• TASK-5019 - IVA Disease Panel create/update - Unable to write a Gene name/id when Disease Panel create is displayed in a modal by @jmjuanes in #821
• TASK-5120 - Port Patch 1.6.5 -> 1.10.0 by @juanfeSanahuja in #824
• TASK-1901 by @gpveronica in #825
• TASK-5009 - IVA Job Browser - Refresh job button missing in Job Browser toolbar by @Rodielm in #827
• TASK-4847 - Visualisation of desired data fields within the IVA from customer data models by @gpveronica in #826
• TASK-5271 - Landpage login error by @jmjuanes in #828
• TASK-5277 - Interpretation edit modal leaves disabled background on save by @jmjuanes in #829

Full Changelog: v2.11.0...v2.12.0

v2.8.6

What's Changed

• TASK-4868 - RD tiering analysis displays an empty Clinical Analysis ID by @jmjuanes in #823
• TASK-2355 - variant export to TSV missing some fields values and a typo in "spliceai" attribute by @Rodielm in #788

Full Changelog: v2.8.5...v2.8.6

v2.8.5

What's Changed

• TASK-4900-1.6.5 - JSorolla Build Error (deprecated library) by @gpveronica in #811
• TASK-4821 - The observations (report) step is empty in Case Interpreter by @jmjuanes in #803
• TASK-4497 by @gpveronica in #809
• TASK-4753 - Implement RD Tiering Disable/Enable option by configuration. Not currently working. by @jmjuanes in #820
• TASK-4937 - Variant Browser - Ignored client settings in columns with sub-columns by @gpveronica in #817

Full Changelog: v2.8.4...v2.8.5

v2.11.0

What's Changed

• TASK-4030 - Incorrect information displayed in the tooltip of the Full-text search on HPO, ClinVar... filter" by @Rodielm in #789
• TASK-4573 - Family cases are created incorrectly from IVA by @jmjuanes in #791
• TASK-4496 - unable to hide cohorts and population columns in Variant analysis browser by @gpveronica in #790
• TASK-4501 - Create family case modal still uses the old pedigree module and is unable to properly plot families larger than trios by @jmjuanes in #786
• TASK-2562 - Panel creator in IVA does not allow to specify genomic location by @gpveronica in #787
• TASK-4498 by @gpveronica in #801
• TASK-4014 File Browser- JSON format files do not show Sample IDs by @Rodielm in #795
• TASK-4499 - The update button is active in the Case Manager in locked cases by @jmjuanes in #800
• TASK-4503 - Disease panel selection issues in the Sample quality control analysis tool in IVA by @jmjuanes in #797
• TASK-4504 - Disease Panels cannot be removed from a case via IVA by @jmjuanes in #793
• TASK-4683 - Unable to launch Sample QC analysis from IVA by @jmjuanes in #796
• TASK-4681 by @gpveronica in #799
• TASK-4547 by @gpveronica in #798
• TASK-3923 - Implement Test Cases for Variant Grids, Catalog Browsers and Visualization by @Rodielm in #802
• TASK-4845 - IVA Docker displays a blank screen by @jmjuanes in #808
• TASK-4810 - Port Patch 1.7.2 -> 1.9.0 by @juanfeSanahuja in #805
• TASK-4900-1.9 - JSorolla Build Error (deprecated library) by @gpveronica in #812
• TASK-724 - Add quality mark in variants track of Genome Browser by @jmjuanes in #804
• TASK-4495 Cohort overview detailed tab samples table needs to be paginated by @Rodielm in #807
• TASK-3902 - Add gene and variant links to Varsome by @jmjuanes in #813
• TASK-4875 - Port Patch 1.6.4 -> 1.9.0 by @juanfeSanahuja in #815
• TASK-4606 - Add labelling for CA marking by @gpveronica in #814
• TASK-4286 - Improvement iteration on Catalog Browsers: CRUD operations in modal, draggable modal, and settings button by @gpveronica in #774
• TASK-4589 - Unable to logout from CAS when SSO is enabled by @jmjuanes in #816

Full Changelog: v2.10.0...v2.11.0

v2.8.4

What's Changed

• TASK-4498 by @gpveronica in #801
• TASK-4014 File Browser- JSON format files do not show Sample IDs by @Rodielm in #795
• TASK-4499 - The update button is active in the Case Manager in locked cases by @jmjuanes in #800
• TASK-4503 - Disease panel selection issues in the Sample quality control analysis tool in IVA by @jmjuanes in #797
• TASK-4504 - Disease Panels cannot be removed from a case via IVA by @jmjuanes in #793
• TASK-4683 - Unable to launch Sample QC analysis from IVA by @jmjuanes in #796
• TASK-4681 by @gpveronica in #799
• TASK-4547 by @gpveronica in #798

Full Changelog: v2.8.3...v2.8.4

v2.2.5

What's Changed

• TASK-1502 - Individual Browser phenotype and disease filters: search does not restring results by @jmjuanes in #594
• Rga bugfix by @antonioaltamura in #610
• Recessive Variant Browser improvements by @antonioaltamura in #631
• Update Cypress dep to v10, feature-filter fix. by @antonioaltamura in #633
• RGA bugfixes by @antonioaltamura in #648
• Rga bugfix KMDS-1402. by @antonioaltamura in #655
• Rga bugfixes by @antonioaltamura in #661
• Rga improvements by @antonioaltamura in #671
• Rga bugfixes by @antonioaltamura in #673
• Rga bugfixes by @antonioaltamura in #682

Full Changelog: v2.2.3...v2.2.5

v2.9.2

What's Changed

• TASK-4026 - Variant Caller File Filters shown in the Sample Variant Browser are not being recognised and passed to the query when selected by @jmjuanes in #773
• TASK-4512 - Error when building IVA by @jmjuanes in #784
• TASK-4017 - Modifications are not saved when attempting to change the analyst of an already assigned interpretation by @jmjuanes in #771
• TASK-729 - Display genomic location default filter by @jmjuanes in #779
• TASK-2366 - IVA API DOC for sample, individual, cohort, family and file ACL produces wrong REST call by @Rodielm in #776
• TASK-2535 - A locked interpretation has active the edit, clear and delete buttons in the interpretation manager by @Rodielm in #768
• TASK-4057 - IVA REST API is not adding the query params to the requested URL by @Rodielm in #778
• TASK-3841 - IVA REST_APIapp for /analysis/alignment/coverage/qc/geneCoverageStats/run is missing the field "genes" by @Rodielm in #775
• TASK-4490 - Exomiser Tab is empty in Sample Variant Browser by @jmjuanes in #780
• TASK-4449 - Issues with the disorder and proband fields when creating a new case by @jmjuanes in #781
• TASK-4314 - IVA sets cookies without Secure flag by @jmjuanes in #764
• TASK-4030 - Incorrect information displayed in the tooltip of the Full-text search on HPO, ClinVar... filter" by @Rodielm in #789
• TASK-4573 - Family cases are created incorrectly from IVA by @jmjuanes in #791
• TASK-4496 - unable to hide cohorts and population columns in Variant analysis browser by @gpveronica in #790
• TASK-4501 - Create family case modal still uses the old pedigree module and is unable to properly plot families larger than trios by @jmjuanes in #786
• TASK-2562 - Panel creator in IVA does not allow to specify genomic location by @gpveronica in #787

Full Changelog: v2.9.0...v2.9.2